PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 266aa MW: 29615.8 Da PI: 9.3309

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00315g02001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.3	8e-18	99	148	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr + +g+Wv+eIr p++ + r++lg++ tae+Aa+a++ a+++++g Niben101Scf00315g02001.1 99 TFRGVRKRN-WGKWVSEIRQPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 148 59**887.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	23.182	99	156	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.68E-21	99	157	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	3.4E-31	99	157	IPR001471	AP2/ERF domain
SMART	SM00380	1.7E-34	99	162	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.3E-10	100	111	IPR001471	AP2/ERF domain
Pfam	PF00847	1.4E-12	100	148	IPR001471	AP2/ERF domain
CDD	cd00018	7.83E-32	100	156	No hit	No description
PRINTS	PR00367	4.3E-10	122	138	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MEDHDLHLKF SISSSSSSIT SSSFASSSNG INSPSTTTSS TSSSSFHETI NAKTSSNGYT 60 CKSKKSSKID QDFTKNGNGH GNEENKKKRK NQGDEKHPTF RGVRKRNWGK WVSEIRQPRK 120 KSRIWLGTYP TAEMAARAHD VAALAIKGNS AYLNFPRLAD QLPRPASTSP KDIQAAAAKA 180 ATSTFLEENI VRDKTEFQIK MQSSHSSTNL NRQELLLNSP SMDHDDTFFD LPDIVIDQYP 240 ISTWQLVAGA DSGIFRLEEP FLWECY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-17	96	156	11	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019244119.1	1e-138	PREDICTED: ethylene-responsive transcription factor ERF039
Swissprot	Q8LBQ7	5e-57	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A1J6J516	1e-137	A0A1J6J516_NICAT; Ethylene-responsive transcription factor erf034
STRING	XP_009771308.1	1e-136	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	5e-52	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]