PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00312g03007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 392aa    MW: 44551.8 Da    PI: 6.678
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00312g03007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP147.78.2e-461222762133
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ss 67 
                               +gkkdrhski+T++g RdRRvRls+++a++fFdLqd+LGfdk+sktieWL+ +++ ai el ++                   s 
  Niben101Scf00312g03007.1 122 TGKKDRHSKICTAQGVRDRRVRLSLHIARKFFDLQDMLGFDKASKTIEWLFSKSNNAITELLENrpqkdysdgneiinsnsasS- 205
                               79**************************************************************88887777766654322220. PP

                       TCP  68 ssaseceaesssssas.........nsssgkaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                                     +++s+s +++         ns+++++++ +  + + + s+  ++n++k esr karararert+ekm+ik
  Niben101Scf00312g03007.1 206 -----EDQKSESLMSEcevlsrweeNSNNEEKERGKDINMNHRLSEVVQNNPHKrESRDKARARARERTKEKMMIK 276
                               .....12222222222334444432333336666666555555555556788888******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.3E-45122274IPR005333Transcription factor, TCP
PROSITE profilePS5136935.596124182IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.806255272IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MFPSGNSQEP FNPYTSKALL EKSFTYNHHP NLSSNSRQED LASFLNFPSP FLDDHSNELP  60
LNQILSHQHH QDQESGDHHH AKESNCTQNI SCETSKEEMS IEAAKTSSKK RNLSATPPRR  120
RTGKKDRHSK ICTAQGVRDR RVRLSLHIAR KFFDLQDMLG FDKASKTIEW LFSKSNNAIT  180
ELLENRPQKD YSDGNEIINS NSASSEDQKS ESLMSECEVL SRWEENSNNE EKERGKDINM  240
NHRLSEVVQN NPHKRESRDK ARARARERTK EKMMIKGLDK KCNKQWYETN PNSSTNILDH  300
LGLSSNSGFL DQEYSNNNSY NNTSVNQEKG SPLEANSQSL EHQFISNYYA NSSAAATGGL  360
DSGNCFLGFL GNWEYAPMAY ADLPGYGNLL QD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019258528.10.0PREDICTED: transcription factor CYCLOIDEA-like
TrEMBLA0A314LFU70.0A0A314LFU7_NICAT; Transcription factor tcp12
STRINGXP_009757682.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-29TCP domain protein 12