PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 630aa MW: 69623.5 Da PI: 4.7087

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00308g01003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.6	1e-52	28	156	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyW 83 lp+G+rF+Ptdeelv++yL+ k++g + e+ +vi+evdi+k+ePwdLp + v+++++ew+fF+++d+ky++g+r nrat++gyW Niben101Scf00308g01003.1 28 LPVGYRFRPTDEELVNHYLRLKINGADSEV-SVIREVDICKLEPWDLPdMsVVESNDNEWFFFCPKDRKYQNGQRLNRATERGYW 111 799**********************999.99**********96347788999*********************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katgkd+++ +kkg+++g+kktLv+y grap+g++t+Wv+heyr+ Niben101Scf00308g01003.1 112 KATGKDRNIATKKGAKIGMKKTLVYYIGRAPEGKRTHWVIHEYRA 156 *****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.98E-59	23	179	IPR003441	NAC domain
PROSITE profile	PS51005	55.75	28	179	IPR003441	NAC domain
Pfam	PF02365	1.1E-26	29	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009814	Biological Process	defense response, incompatible interaction
GO:0010200	Biological Process	response to chitin
GO:0070417	Biological Process	cellular response to cold
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 630 aa Download sequence Send to blast
MMAVLPGDNV VAVLPVDKQM GIPPLNTLPV GYRFRPTDEE LVNHYLRLKI NGADSEVSVI 60 REVDICKLEP WDLPDMSVVE SNDNEWFFFC PKDRKYQNGQ RLNRATERGY WKATGKDRNI 120 ATKKGAKIGM KKTLVYYIGR APEGKRTHWV IHEYRATDKS LDGSHPGQGA FVLCRLFKKN 180 DLKQDEHVES SNLDDTELNA TVAISPTEGY LSEAATPLAV VQASSDSDKN YAAKLPKGEM 240 YGKQLPIESH SNSCIADDTE DQMLDITSIP PDMELEKALG NFCDPSMQPL DWKIFSPLHS 300 QLQVELGSSY LQTPMNNGIG AYQKDVQFQY GTNAFDINEF LDSVIINSDE SSCVDSGQEL 360 ASHRFEAQFC SVPGAPIKDS GSCSESEVEV TQRLVEPDFF EPEVLLGNFD RETAVKREVN 420 SIGATVQEAR ESAPYVSHDH ATGQNSYLAG YGAIQVPNFP SVEQSGGYNN VVGSDSGSGT 480 GIKLRPRQMQ NQSDDRQFRT QGTANRRIRL QVKLQVGPVE SRSHNDSSQG PESHQAVTEG 540 EKASGEHSSS TSGETRDTTC GEYGVSEEAD DLSTPVKDAY DSPVQDTVDV SFKTTKKLSS 600 SSRLYMSMVL VVVSLLVVFL GVWECFRVRV

Sequence ? help Back to Top

Protein Sequence Length: 630 aa Download sequence Send to blast

MMAVLPGDNV VAVLPVDKQM GIPPLNTLPV GYRFRPTDEE LVNHYLRLKI NGADSEVSVI  60
REVDICKLEP WDLPDMSVVE SNDNEWFFFC PKDRKYQNGQ RLNRATERGY WKATGKDRNI  120
ATKKGAKIGM KKTLVYYIGR APEGKRTHWV IHEYRATDKS LDGSHPGQGA FVLCRLFKKN  180
DLKQDEHVES SNLDDTELNA TVAISPTEGY LSEAATPLAV VQASSDSDKN YAAKLPKGEM  240
YGKQLPIESH SNSCIADDTE DQMLDITSIP PDMELEKALG NFCDPSMQPL DWKIFSPLHS  300
QLQVELGSSY LQTPMNNGIG AYQKDVQFQY GTNAFDINEF LDSVIINSDE SSCVDSGQEL  360
ASHRFEAQFC SVPGAPIKDS GSCSESEVEV TQRLVEPDFF EPEVLLGNFD RETAVKREVN  420
SIGATVQEAR ESAPYVSHDH ATGQNSYLAG YGAIQVPNFP SVEQSGGYNN VVGSDSGSGT  480
GIKLRPRQMQ NQSDDRQFRT QGTANRRIRL QVKLQVGPVE SRSHNDSSQG PESHQAVTEG  540
EKASGEHSSS TSGETRDTTC GEYGVSEEAD DLSTPVKDAY DSPVQDTVDV SFKTTKKLSS  600
SSRLYMSMVL VVVSLLVVFL GVWECFRVRV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-44	27	184	16	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-44	27	184	16	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-44	27	184	16	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-44	27	184	16	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-44	27	184	19	173	NAC domain-containing protein 19
3swm_B	2e-44	27	184	19	173	NAC domain-containing protein 19
3swm_C	2e-44	27	184	19	173	NAC domain-containing protein 19
3swm_D	2e-44	27	184	19	173	NAC domain-containing protein 19
3swp_A	2e-44	27	184	19	173	NAC domain-containing protein 19
3swp_B	2e-44	27	184	19	173	NAC domain-containing protein 19
3swp_C	2e-44	27	184	19	173	NAC domain-containing protein 19
3swp_D	2e-44	27	184	19	173	NAC domain-containing protein 19
4dul_A	2e-44	27	184	16	170	NAC domain-containing protein 19
4dul_B	2e-44	27	184	16	170	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00398	DAP	Transfer from AT3G49530	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019226326.1	0.0	PREDICTED: NAC domain-containing protein 62-like
TrEMBL	U5PZF7	0.0	U5PZF7_NICBE; Putative membrane bound NAC transcription factor 1
STRING	XP_009759914.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3363	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49530.1	1e-88	NAC domain containing protein 62

Publications ? help Back to Top
McLellan H, et al. An RxLR effector from Phytophthora infestans prevents re-localisation of two plant NAC transcription factors from the endoplasmic reticulum to the nucleus. PLoS Pathog., 2013. 9(10): p. e1003670 [PMID:24130484]