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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00304g02003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 457aa MW: 48889.2 Da PI: 4.866 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.1 | 2.3e-09 | 115 | 152 | 10 | 47 |
HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +l++++ ++G+g+Wk+I+r+ + Rt+ q+ s+ qk+ Niben101Scf00304g02003.1 115 KLFLKGLDKYGKGDWKSISRHCVLSRTPQQVASHAQKF 152 69**********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.1 | 8 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.15E-7 | 10 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.24E-4 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 14.261 | 91 | 157 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-7 | 92 | 154 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.36E-11 | 93 | 157 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-4 | 95 | 155 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 3.1E-11 | 95 | 155 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 3.56E-8 | 98 | 153 | No hit | No description |
Pfam | PF00249 | 9.6E-6 | 115 | 151 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MSTDRTCNGS FWTKEEDKIF ENTLAVYSSD DDLLMRMAAA LPGKSLEDIK NHYEVLVEDV 60 NAIESGLVPL PRYRNMQSHS RNKSRLPKAD VERRKGVAWT EEEHKCVSLH ADGNKLFLKG 120 LDKYGKGDWK SISRHCVLSR TPQQVASHAQ KFFNRREGVN KERRRASIHD ITSVDIETAG 180 TSQLPNPENM IGPAGGGSLV TASTNDKTGA VDSGVVSTGV GTFTSPIAAI ENKSMLPQEI 240 TVADPVIAVS GGESSGPGAA FANEVNRSYH DVNDDFILGI DDLIMEQEGT YEAGIQVDAE 300 RSLLPSQQQS TAAGSEIYGH PVTRIGSELE ALITEHMVED NEISSIFDVG KTPSSHAMLS 360 SAAHSGMSSY AVAAHSGMSS YTVAAHSGIS SYTVGSFGFN NAPENRVAAP GGGLTIDSQQ 420 LPSIAPSSNF GVGVCPSSNT SVRDEGIFYL GDLFPDI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-13 | 8 | 81 | 7 | 85 | RADIALIS |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016444771.1 | 0.0 | PREDICTED: uncharacterized protein LOC107770029 | ||||
TrEMBL | A0A1S3XXU3 | 0.0 | A0A1S3XXU3_TOBAC; uncharacterized protein LOC107770029 | ||||
STRING | XP_009798833.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4454 | 13 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-55 | MYB family protein |