PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00299g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HB-other | ||||||||
Protein Properties | Length: 493aa MW: 55483.5 Da PI: 8.437 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.7 | 2e-18 | 21 | 71 | 7 | 57 |
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ q+e Le+++++++yp+++++ eLA++lgLte+qV+ WF+ rR k+k+ Niben101Scf00299g00013.1 21 KTRAQIEGLEKFYKEHKYPTESMKSELAQSLGLTEKQVSGWFCHRRLKDKR 71 6899*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-20 | 3 | 71 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.2E-16 | 7 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.617 | 12 | 72 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.7E-19 | 14 | 76 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.23E-16 | 16 | 71 | No hit | No description |
Pfam | PF00046 | 5.6E-16 | 20 | 71 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MHSEDDKGHT EKNKTRIKVI KTRAQIEGLE KFYKEHKYPT ESMKSELAQS LGLTEKQVSG 60 WFCHRRLKDK RLLSRETYAN GRQDRSSGVI QDRGSGFRQD SCGSTKQGDD KNLDHREVES 120 RRLTAPEVSA AGVTYEVGTQ YRTESNLMED TPSGSSSSLR DACFSRNVES FDMATSRYLS 180 SNVPTDLKSV QPRTGPSGYL KVKGQVENAA ITAVKRQLGS LYRQDGPPLG VEFDPLPPGA 240 FESSVQNLVD EPEYAGEPVP ALTPDFSKVY KQSNSCIGHG SISKTNSHVP DLEGASFKKS 300 LKSAHPEYYF NEKAGQNSSI HDGDCYYLGR DSPIDMHKGS GREVTVDGRC NYKYMAKHDG 360 AEIRTNTSSS SGFRSPRTGK VNGEQVKPRF TSCNETNLKF MEEEDLERKP SSFVLKGSKH 420 RYCPERVLSS KVEKDYIHVD RPPVDENYNL DRVKIPWENE MRAAKRARDE DPNHQEYPRN 480 ASGTQCHPRQ IVR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009783344.1 | 0.0 | PREDICTED: uncharacterized protein LOC104231943 isoform X2 | ||||
Refseq | XP_016443574.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT1-like isoform X1 | ||||
Refseq | XP_016443575.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT1-like isoform X1 | ||||
Refseq | XP_016443576.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT1-like isoform X1 | ||||
TrEMBL | A0A1S3XUM1 | 0.0 | A0A1S3XUM1_TOBAC; homeobox-DDT domain protein RLT1-like isoform X1 | ||||
TrEMBL | A0A1U7X8T7 | 0.0 | A0A1U7X8T7_NICSY; uncharacterized protein LOC104231943 isoform X2 | ||||
STRING | XP_009783319.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3436 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 7e-70 | HB-other family protein |