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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00294g01005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 125aa MW: 14155 Da PI: 10.3587 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 123.9 | 5.1e-39 | 30 | 93 | 3 | 66 |
S1FA 3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGva 66 + veakG+nPGlivll++ggl+l fl+gny+lyvyaqk+lPP+kkkP+skkk+kre+lkqGv+ Niben101Scf00294g01005.1 30 ANDVEAKGFNPGLIVLLLIGGLVLAFLIGNYVLYVYAQKTLPPKKKKPLSKKKMKRERLKQGVS 93 6789***********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD019013 | 0.005 | 31 | 94 | No hit | No description |
Pfam | PF04689 | 1.3E-35 | 33 | 93 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MNFRVERAAE HGYLPSLIGK EKKKGIKNMA NDVEAKGFNP GLIVLLLIGG LVLAFLIGNY 60 VLYVYAQKTL PPKKKKPLSK KKMKRERLKQ GVSDLESRCC MYVEVVELIS GKTIMAVKEM 120 WQELN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018623407.1 | 4e-38 | PREDICTED: DNA-binding protein S1FA-like | ||||
TrEMBL | A0A1U7WEN5 | 2e-36 | A0A1U7WEN5_NICSY; DNA-binding protein S1FA-like | ||||
STRING | XP_009590376.1 | 2e-37 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3174 | 22 | 49 |