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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Niben101Scf00272g11024.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
HD-ZIP |
| Protein Properties |
Length: 272aa MW: 31347.7 Da PI: 5.6705 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf00272g11024.1 | genome | BTI | - |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 53.1 | 5.3e-17 | 69 | 120 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa +k
Niben101Scf00272g11024.1 69 RRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRATWK 120
57899**********************************************9 PP
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| 2 | HD-ZIP_I/II | 121.1 | 5.8e-39 | 67 | 158 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86
k rrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRA +ktkqlEkd+++Lkr+++ +k+en++L +++++
Niben101Scf00272g11024.1 67 KIRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRATWKTKQLEKDFDVLKRQFEVVKAENDSLIAHNQK 151
669********************************************************************************** PP
HD-ZIP_I/II 87 Lreelke 93
L++e+++
Niben101Scf00272g11024.1 152 LHAEIMS 158
**99975 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 272 aa
Download sequence Send
to blast |
MTCTNEMAFF PPNLILDTPH QDDHQDFQGV GSFLEKRAMS FSGMEANNNC EEDLCDDGLH 60
EAGREKKIRR LNMEQVKTLE KNFELGNKLE PERKMQLARA LGLQPRQIAI WFQNRRATWK 120
TKQLEKDFDV LKRQFEVVKA ENDSLIAHNQ KLHAEIMSLK NVEQPTEISI NLNKETEGSS 180
CNRSENSSEI MKLDISMRPA AIDCPITRCS RLLFPPPMSP TGVAHLFQRQ VQQSNMKLMD 240
QTVKEETLSS MLSVIDDQSP GFWPWLEQPH FN
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ribone PA,Capella M,Chan RL
Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
J. Exp. Bot., 2015. 66(19): p. 5929-43
[PMID:26136262] - Wang X, et al.
Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
Sci China Life Sci, 2018. 61(1): p. 79-87
[PMID:28887625] - Ebrahimian-Motlagh S, et al.
JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
Front Plant Sci, 2017. 8: p. 2118
[PMID:29326734]
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