PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00272g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 532aa    MW: 57578.5 Da    PI: 7.7294
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00272g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.71.2e-33239295259
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  Niben101Scf00272g00001.1 239 DDGYNWRKYGQKHVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHQ 295
                               8****************************************.***************8 PP
2WRKY106.61.3e-33418476159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+ +dpk+v++tYeg+Hnh+
  Niben101Scf00272g00001.1 418 LDDGYRWRKYGQKVVKGNPYPRSYYKCTSQGCNVRKHVERAPSDPKAVITTYEGKHNHD 476
                               59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-30231297IPR003657WRKY domain
PROSITE profilePS5081123.984233297IPR003657WRKY domain
SuperFamilySSF1182902.22E-26237297IPR003657WRKY domain
SMARTSM007748.1E-38238296IPR003657WRKY domain
PfamPF031061.5E-25239295IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-37404478IPR003657WRKY domain
SuperFamilySSF1182907.32E-30410478IPR003657WRKY domain
PROSITE profilePS5081139.054413478IPR003657WRKY domain
SMARTSM007743.9E-40418477IPR003657WRKY domain
PfamPF031062.7E-26419476IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MAENEASSSP SSSRAPMRPT ITLPPRASVE NLFMGGPGGI SPGPMTLVSS FFSDPASEYP  60
SFSQLLAGAM ASPAALSGQR QGFPPPPETS VSISKGKESA SGDMDFGFKQ NRPSGLVITQ  120
SPMFTIPPGL SPAGLLGSPL LFSPGQGPFG MSHQQALAQV TAQAAHPQSQ MHIQSDYPSS  180
SAAPAPSFSQ FQSLISNATA NQQILPPASD PNIMKEASEV SVSDQRSEPA SSAVDKPADD  240
GYNWRKYGQK HVKGSEYPRS YYKCTHPNCP VKKKVERSLD GQVTEIIYKG QHNHQPPQSS  300
KRSKESGNPN GNYNLQGPSE LSSEGVTGTL NNSKDSMPSY SLRMKDQESS QATHDQVSGS  360
SEGEELGDAE TIADRNDERE SKRRAIEVQT SEAASSASHR TVAEPRIIVQ TTSEVDLLDD  420
GYRWRKYGQK VVKGNPYPRS YYKCTSQGCN VRKHVERAPS DPKAVITTYE GKHNHDVPAA  480
RNSNHNTANN SVSQMRPHNP VVDKQDSTRR TGFSNNEQQP IALLRFKEEQ VT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-41239479878Probable WRKY transcription factor 4
2lex_A1e-41239479878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619961.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI901e-172WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A1S3XR750.0A0A1S3XR75_TOBAC; probable WRKY transcription factor 4
STRINGXP_009619961.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-139WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]