PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf00262g02008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 115aa MW: 12622.3 Da PI: 4.146

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00262g02008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	31.6	4.6e-10	1	37	61	97
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelall 97 +vyeA ar+rdPvyG+vg+i++lq+++ l++ l+++ Niben101Scf00262g02008.1 1 MVYEATARLRDPVYGCVGIISALQKHVFDLQSVLNEA 37 69*************************9999887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.4E-8	1	36	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MVYEATARLR DPVYGCVGII SALQKHVFDL QSVLNEALAE AMSLRTQLSD ALSLPSLLEG 60 SPFTPENHEF LHFQKPSEQN AYTDASDALL LLPEAAGNHC PQDSEVLLPL PYLDI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016445883.1	6e-68	PREDICTED: LOB domain-containing protein 3-like
TrEMBL	A0A1S3Y0Z4	1e-66	A0A1S3Y0Z4_TOBAC; LOB domain-containing protein 3-like
STRING	XP_009631247.1	2e-67	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13147	14	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-12	LOB domain-containing protein 1