PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00261g02004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 283aa MW: 31609.5 Da PI: 8.8542

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00261g02004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.9	4.6e-33	27	81	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH++Fv+av++LGG++kAtPk++l+lm+vkgLtl+h+kSHLQkYRl Niben101Scf00261g02004.1 27 KPRLRWTVDLHQHFVDAVTKLGGPDKATPKSVLRLMGVKGLTLYHLKSHLQKYRL 81 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-32	24	82	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.262	24	84	IPR017930	Myb domain
SuperFamily	SSF46689	4.48E-16	27	84	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-24	27	82	IPR006447	Myb domain, plants
Pfam	PF00249	5.8E-8	29	80	IPR001005	SANT/Myb domain
Pfam	PF14379	2.3E-21	127	173	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MYNGSRVGGG GGGFMYENEV VMTRDPKPRL RWTVDLHQHF VDAVTKLGGP DKATPKSVLR 60 LMGVKGLTLY HLKSHLQKYR LGQQAKRQNA AEQNKENSGD SSGQFNLHSS GPSTSSLSMN 120 YIQGDVPIAE AVMCQIDVQK RLQEQLEVQQ KLQMRIEAQG KYLQAILSKA QKSIAVNMNS 180 PSAVEATRAQ LTDFDLPLSN LMDYTNRENR DDNTIDKRTH DNINGELHRS NYIVEEEQKS 240 NINLKLKEAS INFDLNSRSS YDFVGANAAV LEAKSLSHGR LDT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-19	27	80	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	27	80	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	27	80	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	27	80	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019247845.1	0.0	PREDICTED: myb family transcription factor PHL11 isoform X1
Swissprot	C0SVS4	1e-79	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A1J6ID59	0.0	A0A1J6ID59_NICAT; Myb family transcription factor phl11
STRING	XP_009769428.1	1e-174	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4416	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	9e-67	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]