PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00245g04007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 488aa MW: 54124 Da PI: 6.282

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00245g04007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.8	8.8e-37	142	201	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+st+tkfCyynn +++qPr+fC++C+ryWt+GG++rn+PvG+grrknk+ Niben101Scf00245g04007.1 142 PDKILPCPRCNSTDTKFCYYNNNNVNQPRHFCRSCQRYWTAGGTMRNLPVGAGRRKNKNL 201 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	139	199	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.4E-31	144	200	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.922	146	200	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	148	184	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MTCDSEIKLF AKILPMVVSG EYSGAGRSTI DNRSSTGFDV DQYLEDNRTS SSENDEGSES 60 INYENQAADK DDIHITRELS EDKLEEEDQN QMMEISENPK TSSESEKSPK SPTNEDHQTV 120 RSSETENEPN TTDSQQTLLK KPDKILPCPR CNSTDTKFCY YNNNNVNQPR HFCRSCQRYW 180 TAGGTMRNLP VGAGRRKNKN LASHYHHISI PDDVLLASRI GSPNGFHHPM FKPNGTVLSF 240 GPKLPLYDSM VSALNPAERR APNVIPNGFY KQEHLNSSCK GGENGDDCSK GSSIKTSNMM 300 VEGGNIKPHE TVMRNTNGFP SPAPCLHGVP FPFPWNAAVP MSAIYPFGFP MPFYPAPYWS 360 SLPPWSNPWL SQPSRTENEK ASGSVPNSPL GKHSREGDDP EGNEPVEQKT SKRSILVPKT 420 LRIDDPDEAA KSSIWSTLGI KYDSASRGGF FKALQPKIDD KDHKDTTSPV LHANPAALSR 480 SLVLQERT

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MTCDSEIKLF AKILPMVVSG EYSGAGRSTI DNRSSTGFDV DQYLEDNRTS SSENDEGSES  60
INYENQAADK DDIHITRELS EDKLEEEDQN QMMEISENPK TSSESEKSPK SPTNEDHQTV  120
RSSETENEPN TTDSQQTLLK KPDKILPCPR CNSTDTKFCY YNNNNVNQPR HFCRSCQRYW  180
TAGGTMRNLP VGAGRRKNKN LASHYHHISI PDDVLLASRI GSPNGFHHPM FKPNGTVLSF  240
GPKLPLYDSM VSALNPAERR APNVIPNGFY KQEHLNSSCK GGENGDDCSK GSSIKTSNMM  300
VEGGNIKPHE TVMRNTNGFP SPAPCLHGVP FPFPWNAAVP MSAIYPFGFP MPFYPAPYWS  360
SLPPWSNPWL SQPSRTENEK ASGSVPNSPL GKHSREGDDP EGNEPVEQKT SKRSILVPKT  420
LRIDDPDEAA KSSIWSTLGI KYDSASRGGF FKALQPKIDD KDHKDTTSPV LHANPAALSR  480
SLVLQERT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019225611.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A314KUW5	0.0	A0A314KUW5_NICAT; Cyclic dof factor 3
STRING	XP_009587069.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	2e-78	cycling DOF factor 3