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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Niben101Scf00245g02010.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
NAC |
| Protein Properties |
Length: 326aa MW: 37219.2 Da PI: 7.7901 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf00245g02010.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 177.3 | 4.1e-55 | 17 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85
lppGfrFhPtdeel+++yL +kv ++++ + +i evd++k+ePwdLp k+k +ekewyfF+ rdkky+tg r+nrat++gyWka
Niben101Scf00245g02010.1 17 LPPGFRFHPTDEELITHYLSNKVVDSNFFA-IAIGEVDLNKIEPWDLPWKAKMGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKA 100
79*************************877.78***************888999******************************* PP
NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
tgkd+e+++ +++lvg+kktLvfy+grapkgekt+Wv+heyrle
Niben101Scf00245g02010.1 101 TGKDREIFR-GNSLVGMKKTLVFYTGRAPKGEKTNWVIHEYRLE 143
*********.999*****************************85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 326 aa
Download sequence Send
to blast |
MENDSGLVKE DDQQMELPPG FRFHPTDEEL ITHYLSNKVV DSNFFAIAIG EVDLNKIEPW 60
DLPWKAKMGE KEWYFFCVRD KKYPTGLRTN RATAAGYWKA TGKDREIFRG NSLVGMKKTL 120
VFYTGRAPKG EKTNWVIHEY RLEGRLSLQN LPKTAKNEWV ICRVFQKSCG GKKIHISGLV 180
KLNSDENEMA NSNCLPPLTD SSPYTIKIKP SASQSSHVHC FSNFFTAQKS QENMINCFNN 240
SPMNNQIFPV QSSFPSQVSF GVQNPTVLKA LVENYTQNFK KEEIVSLSHE TKLSTDMNNE 300
ISSIVSNLEM GRKLLEDQSL DCLWSY
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 7e-55 | 8 | 173 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 7e-55 | 8 | 173 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 7e-55 | 8 | 173 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 7e-55 | 8 | 173 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-54 | 8 | 173 | 9 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 1e-54 | 8 | 173 | 9 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 1e-54 | 8 | 173 | 9 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 1e-54 | 8 | 173 | 9 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 1e-54 | 8 | 173 | 9 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 1e-54 | 8 | 173 | 9 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 1e-54 | 8 | 173 | 9 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 1e-54 | 8 | 173 | 9 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 7e-55 | 8 | 173 | 6 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 7e-55 | 8 | 173 | 6 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
