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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00193g03004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 460aa MW: 50501.9 Da PI: 6.8836 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.5 | 3.4e-39 | 105 | 165 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss Niben101Scf00193g03004.1 105 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGSGRRKNKSSS 165 7899******************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-31 | 102 | 162 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.3E-32 | 107 | 163 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.593 | 109 | 163 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 111 | 147 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MSEVKLFGKT IHLPLDDLLD QRNSSAATTL HQDLITSEAD HTQSKNRDDF NNLTADEAVE 60 PETSSGRSDD PKKEDADNET SSPKATKKEE PNEANVTQEK ALKKPDKILP CPRCNSMETK 120 FCYYNNYNVN QPRHFCKKCQ RYWTAGGTMR NVPVGSGRRK NKSSSTTGYR HIMVSDALQE 180 ARFEAAHGMN LPMLRANRTV LAFGSDKPLC DSMASILNLA EKSQNSVQNG FNGSEQRTPS 240 ACGGKETGNN ISSGACSTAS NSTHDLAWKN FQAFPPQVHQ FPGHPWPYSY NAAPWTSAVP 300 QPNLAPPRFP VPFYPAPPYW GCTVASPWNV PWVSPPSSSP DCSVLSATPT SPTLGKHSRD 360 ECALNQSNSE KEDPLQDIDG ERAVLAPKTL RVDDPDEAAK SSIWSTLGIK NEKNDSTNGA 420 RLFKAFNSKV DLRNHESDAS LVLQANPAAL SRSLNFQEST |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009788566.1 | 0.0 | PREDICTED: cyclic dof factor 1-like | ||||
TrEMBL | A0A1U7XFY6 | 0.0 | A0A1U7XFY6_NICSY; cyclic dof factor 1-like | ||||
STRING | XP_009788566.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA532 | 24 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 8e-87 | cycling DOF factor 2 |