PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00173g09005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 514aa    MW: 56768.7 Da    PI: 6.7198
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00173g09005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.52.4e-11231287155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV++++++gr++A+++d  +       rk  + g ++ +e+Aa+a++ a++k++g
  Niben101Scf00173g09005.1 231 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAARAYDLAALKYWG 287
                               57*******************4444.2344336655.779999**************98 PP
2AP249.88.6e-16330381155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Niben101Scf00173g09005.1 330 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 381
                               57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.07E-15231297IPR016177DNA-binding domain
CDDcd000185.83E-20231297No hitNo description
PfamPF008476.0E-9231287IPR001471AP2/ERF domain
PROSITE profilePS5103217.649232295IPR001471AP2/ERF domain
SMARTSM003801.2E-22232301IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-13232296IPR001471AP2/ERF domain
PRINTSPR003673.4E-6233244IPR001471AP2/ERF domain
CDDcd000181.32E-11330389No hitNo description
SuperFamilySSF541719.15E-18330390IPR016177DNA-binding domain
PfamPF008474.5E-10330381IPR001471AP2/ERF domain
PROSITE profilePS5103219.151331389IPR001471AP2/ERF domain
SMARTSM003801.6E-31331395IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-18331389IPR001471AP2/ERF domain
PRINTSPR003673.4E-6371391IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MAPDNNWLSF SLSSMEMLSS SASQSNSMLQ SNMKLAPTFD GSSSADSHHY YFADNFFPHG  60
WSNPKSQVMY TEGEKEALGL NINGNDSSIF QNFLDTQIHQ QTPPKLEDFL GGDSSSLTQD  120
SSSLTHQIYE QQQSNGSTVY HQDFKNLAHG FQYQATAAFS NNSGSEVDNS VGTEFVSESC  180
NDLAYSQCPP ALSTGALSLT VNTTQCLEKE KAIVAVESCK KITDTFGQRT SIYRGVTRHR  240
WTGRYEAHLW DNSCRREGQA RKGRQGGYDK EEKAARAYDL AALKYWGPTA TTNFPVSNYT  300
KELEEMKHMT KQEFIASLRR KSSGFSRGAS IYRGVTRHHQ QGRWQARIGR VAGNKDLYLG  360
TFATEEEAAE AYDIAAIKFR GVNAVTNFEM NRYDVEAIMK SSLPVGGTAK RLKLSLEAEQ  420
KSLSSNNQQQ TTQSSRSNDS SSNINFGAMP PMSAIPCGVP FDATAPFYPH NFFHHLQSAN  480
AGAPDTSGAV TTMASAMPLL PSGAEFFIWP HQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019253659.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X1
SwissprotQ52QU21e-167AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1J6IEH40.0A0A1J6IEH4_NICAT; Ap2-like ethylene-responsive transcription factor ail6
STRINGXP_009782436.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-149AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]