PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00159g08019.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 526aa    MW: 58258.6 Da    PI: 6.8307
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00159g08019.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.29.4e-30245302260
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                               +DgynWrKYGqK v+g+ef+rsYY+Cts++C +kk+vers+ d+++++i+Y  +H+h+k
  Niben101Scf00159g08019.1 245 EDGYNWRKYGQKLVRGNEFTRSYYKCTSPNCLAKKQVERSH-DGHITNIHYIAKHEHPK 302
                               7****************************************.***************85 PP
2WRKY104.94.2e-33421479159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ++Dgy+WrKYGqK vkg+++prsYYrC+sagCp+kk+ver+++dpk+v++ Yeg+H+h+
  Niben101Scf00159g08019.1 421 VNDGYRWRKYGQKLVKGNPNPRSYYRCSSAGCPAKKHVERASHDPKLVVTAYEGQHDHD 479
                               58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-26238303IPR003657WRKY domain
PROSITE profilePS5081123.227239303IPR003657WRKY domain
SuperFamilySSF1182902.22E-23241303IPR003657WRKY domain
SMARTSM007749.3E-32244302IPR003657WRKY domain
PfamPF031063.2E-22245301IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-34407481IPR003657WRKY domain
SuperFamilySSF1182906.15E-29413481IPR003657WRKY domain
PROSITE profilePS5081135.944416481IPR003657WRKY domain
SMARTSM007743.2E-38421480IPR003657WRKY domain
PfamPF031063.7E-26422478IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MGTHKENVTD EVSSEKLQQK QDLDTVTYRS ESKEKRICES MSAEVISGEL QKRVRSDALE  60
KSSQSNQDEN ALSTTCQEVS GEVEPKKSVV EGIENFQLEP DPDTATNRSE SKEKGTCDSV  120
SAEVVSDELL KGLSADSLAK ASESNRVSVL PKKEPYIKSC ESDPPVKDRN VSLVPGKASD  180
SSQYIQREKM EAVVSQPNQE QVTYSTRPEK ALDKLQPRRN LDTSVQALPS DQEITPFRSP  240
EKPSEDGYNW RKYGQKLVRG NEFTRSYYKC TSPNCLAKKQ VERSHDGHIT NIHYIAKHEH  300
PKPLNSPQIS PEFVVPTQMR QTDMPMVTPQ KAEGEKSIVI GQTCQSIEPS ESSLSAGIVP  360
AGVSAKDTVL KPHKSGDEAD NSGGHPKRQK REVPKSDEIP PIKSHSEPQH IVQTRSEVDI  420
VNDGYRWRKY GQKLVKGNPN PRSYYRCSSA GCPAKKHVER ASHDPKLVVT AYEGQHDHDI  480
PPSRTVMQNA ASADSNNTPR ISGESTSESG ENKHVGLDRV VHIGAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-34246482475WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019250091.10.0PREDICTED: WRKY transcription factor 1-like isoform X1
TrEMBLA0A1J6I8I40.0A0A1J6I8I4_NICAT; Putative wrky transcription factor 20
STRINGXP_009605529.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45582242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.24e-74zinc-dependent activator protein-1