PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Niben101Scf00158g06008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 337aa MW: 37086 Da PI: 7.113

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00158g06008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	209.7	7.3e-65	108	254	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsals 87 g++sCqdCGnqakkdC+h+RCRtCCksr+++C+thv+stWvpaakrre+qqq a++++++ + + +++kr +++ + s+l Niben101Scf00158g06008.1 108 GGGISCQDCGNQAKKDCQHMRCRTCCKSRSLQCQTHVRSTWVPAAKRREKQQQIASLQQQEHR-GNINNPKRLKDD--PSGSSLV 189 5789**************************************************99776654.344555565654..788999 PP DUF702 88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +t+l+s+++ +e+ ++P++v s+avf++vr+ss+++ e+++aYqtav+igGh+fkGiLydqGle+ Niben101Scf00158g06008.1 190 CTRLPSNNA--GIEVGNFPSKVTSTAVFHRVRMSSIEETEDQIAYQTAVNIGGHIFKGILYDQGLES 254 **99975..588999*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	7.6E-60	110	253	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.1E-26	112	154	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.6E-25	205	252	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MAGFFSLGGR DTSQEQHHQE TINHHNPESN WFLYRNHDQD QLPTYKGFEL WQQQQQEDEQ 60 QNHQIRNPII NPLQDLYPTS AIGLGVGPIA TDHGASRSVA FVMMRSSGGG ISCQDCGNQA 120 KKDCQHMRCR TCCKSRSLQC QTHVRSTWVP AAKRREKQQQ IASLQQQEHR GNINNPKRLK 180 DDPSGSSLVC TRLPSNNAGI EVGNFPSKVT STAVFHRVRM SSIEETEDQI AYQTAVNIGG 240 HIFKGILYDQ GLESQYNNMN ATTGDSSFGG TEPVVPHQHN LIGTATSAAT SNTAASGGGT 300 AAEAEGLHLL EHSIYSAPLI NTFMAAGTQF FPHPARF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778393.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Refseq	XP_016477618.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	1e-113	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A1S4AMG2	0.0	A0A1S4AMG2_TOBAC; protein SHI RELATED SEQUENCE 1-like
TrEMBL	A0A1U7WIB5	0.0	A0A1U7WIB5_NICSY; protein SHI RELATED SEQUENCE 1-like
STRING	XP_009778393.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	8e-72	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]