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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Niben101Scf00152g18004.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
BBR-BPC |
| Protein Properties |
Length: 326aa MW: 36446.4 Da PI: 10.1206 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf00152g18004.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 379.7 | 4.7e-116 | 1 | 326 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye...pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverd 78
mdd+g+r+ r+k+ + + ++ +s+k q+m+++aerda+i+ernlalsekkaa+aerdma lqrd+a+aern+a++erd
Niben101Scf00152g18004.1 1 MDDSGHRDngRHKPpQGQwlmQHqPSMK-----QIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERD 80
999*998888888732222232234444.....**************************************************** PP
GAGA_bind 79 nkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekk 163
n++++l+++e s++ + +v+++ ++ ++++ +++p++++++++ r+++ +e+ p++ a+e ++ +++k rak+pk+ +
Niben101Scf00152g18004.1 81 NAIATLQYRESSISGGGQIARGVVKHMHHPQHVHVHHQPHMGEPTYNPRDMHVNESIPVSPVAPEPTKPRRNK---RAKEPKAMT 162
***********999888899999999999999999999********************988777666655555...555555544 PP
GAGA_bind 164 akkkkkksekskkkvkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGal 219
+kk+ k kkvk+e++d + sk ++k++dl+ln+v++De+t+PvPvCsCtGal
Niben101Scf00152g18004.1 163 GSKKTPKA---SKKVKRETEDLNqttfgksqewkgvqemgdasddlnrqlavSKPDWKDQDLGLNQVAFDETTMPVPVCSCTGAL 244
44333322...233333333311234566678999************************************************** PP
GAGA_bind 220 rqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
r CYkWGnGGWqS+CCtt++S+yPLP+++++r+aRi+grKmS++af+klL++LaaeG+dlsnpvDLk+hWAkHGtn+++ti+
Niben101Scf00152g18004.1 245 RPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKNHWAKHGTNRYITIK 326
*********************************************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 326 aa
Download sequence Send
to blast |
MDDSGHRDNG RHKPPQGQWL MQHQPSMKQI MAIMAERDAA IQERNLALSE KKAALAERDM 60
AILQRDSAIA ERNNAIMERD NAIATLQYRE SSISGGGQIA RGVVKHMHHP QHVHVHHQPH 120
MGEPTYNPRD MHVNESIPVS PVAPEPTKPR RNKRAKEPKA MTGSKKTPKA SKKVKRETED 180
LNQTTFGKSQ EWKGVQEMGD ASDDLNRQLA VSKPDWKDQD LGLNQVAFDE TTMPVPVCSC 240
TGALRPCYKW GNGGWQSSCC TTNLSMYPLP AVPNKRHARI GGRKMSGSAF TKLLSRLAAE 300
GHDLSNPVDL KNHWAKHGTN RYITIK
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
