 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Niben101Scf00149g03002.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
Trihelix |
| Protein Properties |
Length: 300aa MW: 35455.1 Da PI: 8.7953 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf00149g03002.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 77.1 | 2.6e-24 | 49 | 131 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85
+W+ qe+++ + +r e+++++ ++k++k lWe ++ km+++g++rsp+qCk+kw+nl +ryk +++ e + ++++p++++l
Niben101Scf00149g03002.1 49 QWSIQETRDFLMIRAELDQTFVETKRNKLLWEVIATKMKDKGYNRSPEQCKCKWKNLVTRYKGCETLEPEA--L-RQQFPFYNEL 130
7********************************************************************95..3.4589*****9 PP
trihelix 86 e 86
+
Niben101Scf00149g03002.1 131 Q 131
8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MDPHLHHHHH QNHQQQQQQQ NPFSRQSVNV DTIGGGVNIG TTSGDRFPQW SIQETRDFLM 60
IRAELDQTFV ETKRNKLLWE VIATKMKDKG YNRSPEQCKC KWKNLVTRYK GCETLEPEAL 120
RQQFPFYNEL QAIFAARMQR MLWLEAEGGG GSKKKTISQL SSDEEEENED SEGEKVVGIT 180
KKKRKVKGNN VNIVGSSSRG GSGNLLVNSF KEILDDFMKQ QMAMEMQWLK AYEAKEEERR 240
IKEMEWRQTM EALENERLMM ERRWREREEQ RRIREEARAE KRDALITALL NKLRREDHNM
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |
