PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00138g05021.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 322aa MW: 35684.3 Da PI: 8.9037

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00138g05021.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.1	9.5e-34	32	86	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Niben101Scf00138g05021.1 32 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 86 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-32	29	87	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.347	29	89	IPR017930	Myb domain
SuperFamily	SSF46689	1.38E-16	31	87	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.4E-24	32	87	IPR006447	Myb domain, plants
Pfam	PF00249	9.5E-8	34	84	IPR001005	SANT/Myb domain
Pfam	PF14379	5.0E-9	127	150	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MFHAKKPSTM NSHDRPMCVQ GDSGLVLTTD PKPRLRWTVE LHERFVDAVT QLGGPDKATP 60 KTIMRVMGVK GLTLYHLKSH LQKFRLGKQP HKEFNDHSVK DGDRATSLEL QRNSASSSGM 120 IGRNMNEHLQ LRIEAQGKYM QTILEKACQT LGGEENMALP ARTFKGMGNQ VGGIIPDISA 180 AFKEFGTPPL SFSSFQDLNI CGGHEQRLEL HPQSSMGERS SSFESFLVAN NNNNTDHNLS 240 LGKKRSSPYS NGGPNQDDII QMAPLSMERS CNPELDSVSD IYESKPMLDE KKFDAKLERP 300 SPRRAPQLSS LSAQSGRNSV FG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-19	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001312946.1	0.0	myb family transcription factor APL-like
Refseq	XP_009771133.1	0.0	PREDICTED: myb family transcription factor APL isoform X1
Swissprot	Q9SAK5	1e-101	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A1U7VXM2	0.0	A0A1U7VXM2_NICSY; myb family transcription factor APL isoform X1
TrEMBL	V9LXI2	0.0	V9LXI2_TOBAC; Myb family transcription factor APL
STRING	XP_009771133.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7942	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	1e-101	G2-like family protein

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]