PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00133g08004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 373aa    MW: 42086.7 Da    PI: 8.9215
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00133g08004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like993.3e-3175128255
                   G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               prlrWtp LH rF++ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+
  Niben101Scf00133g08004.1  75 PRLRWTPGLHLRFIHAVERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 128
                               8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-2971129IPR009057Homeodomain-like
PROSITE profilePS5129411.90171131IPR017930Myb domain
SuperFamilySSF466891.56E-1472130IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-2275130IPR006447Myb domain, plants
PfamPF002491.6E-876127IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MKRGSSAEDS KSSPKNQIEF EDEEEEEEED DLETEENTKL PKGTRTSSSN STVEENGKKS  60
TNSGGVRQYV RSKTPRLRWT PGLHLRFIHA VERLGGQDRA TPKLVLQLMN IKGLSIAHVK  120
SHLQMYRSKK TDDPNQISTD GRFLIENGDH HIFNLSELPR LQGMFNQTST SSLRYDDSIW  180
SRQVNSSLYN PYNINIGGAS SLSTRHGFSS HGRSHGPLFP WNKTLQIEKK PQHFHNQRFW  240
STQIGTSSTK QNLLMTLPID RDGDGGREQV IMKTQMRNNN SLASRDKCWT TEAGTTTTTT  300
SIPNKRKIQN SEINLDLNLS LKITREDDDH QKKLKAEEVG NILSLSLFSS STTSVDDQQN  360
QGARIASTLD LTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-1676130458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-1676130458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-1676130357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-1676130357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-1676130357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-1676130357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-1676130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-1676130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-1676130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-1676130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-1676130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-1676130458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019253496.10.0PREDICTED: uncharacterized protein LOC109232256
TrEMBLA0A1J6IUE30.0A0A1J6IUE3_NICAT; Putative myb family transcription factor
STRINGXP_009791663.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85732129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.17e-47G2-like family protein