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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00132g02003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARF | ||||||||
Protein Properties | Length: 665aa MW: 74423.1 Da PI: 6.5577 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77 | 2.1e-24 | 129 | 229 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+kvlt sd++++g +++ +k+a+e+ +++++ +++l+ +d++g +W +k+i+r++++r++lt+GW+ Fv++++L +gD++ Niben101Scf00132g02003.1 129 FCKVLTASDTSTHGGFSVLRKHANEClppldMNQQTPTQELIAKDLHGTEWHFKHIFRGQPRRHLLTTGWSTFVSSKRLVAGDSF 213 99****************************9555555679********************************************* PP EEEE-SSSEE..EEEEE- CS B3 81 vFkldgrsefelvvkvfr 98 vF + +++el+v+v+r Niben101Scf00132g02003.1 214 VFL--RGDNGELRVGVRR 229 ***..3489999****98 PP | |||||||
2 | Auxin_resp | 99.5 | 4.4e-33 | 255 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F++ ++k+++++k+ +svGmRfkm+fe+e+s+err++Gt+vg++dl++ +W++S WrsLk Niben101Scf00132g02003.1 255 ASHAVTTQTLFVVYYKPRT--SQFIIGLNKYLETVKHGYSVGMRFKMQFEGEESPERRFTGTIVGIEDLSS-QWKDSTWRSLK 334 689***************6..9**********************************************777.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.01E-41 | 120 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-42 | 122 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.79E-22 | 127 | 229 | No hit | No description |
SMART | SM01019 | 5.4E-22 | 129 | 231 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.365 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-22 | 129 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.3E-31 | 255 | 334 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.2E-11 | 552 | 644 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.08E-11 | 555 | 637 | No hit | No description |
PROSITE profile | PS51745 | 22.4 | 561 | 642 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 665 aa Download sequence Send to blast |
MENNGCYQSQ QQTNFSAKGK DDLYQELWKL CAGPLVDVPK VGERVYYFPQ GHMEQLEASM 60 NQELNLRIPS FSLKPKILCR VIHTQLLAEQ DTDEVYAQIT LMPEAAEQAE PTSQDPCPPE 120 PQRPKIHSFC KVLTASDTST HGGFSVLRKH ANECLPPLDM NQQTPTQELI AKDLHGTEWH 180 FKHIFRGQPR RHLLTTGWST FVSSKRLVAG DSFVFLRGDN GELRVGVRRL ARQQSSMPSS 240 VISSQSMHLG VLATASHAVT TQTLFVVYYK PRTSQFIIGL NKYLETVKHG YSVGMRFKMQ 300 FEGEESPERR FTGTIVGIED LSSQWKDSTW RSLKVQWDEP ASVSRPDRVS PWEIEPFMAS 360 VPNPLVPSMA GKNKRHRPHI ETKISEPASS IASAVWNPSI DSPQLNTTGI NSSTLTSHTD 420 SGCGWRLPPL NTSSSMLVDE TEDSKSASAW CGFPSILSSQ FSNGTNQPIL SPTDERKCDT 480 ITTCRLFGID LKSTLIRTTE APLPKPANVS NVSVERASPN TVPAGDSDQN SDLSIDFKDQ 540 KQGQLQLLLK EVQSKQNCST RSRTKVQMQG VAVGRAVDLT ALKGYNELIK ELEEMFEIQG 600 ELHPRNKWEI VFTDDEGDMM LMGDHPWLEF CNVVRRIFIV STQDMKNWSA GNKLLSCADN 660 EAIAF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-175 | 21 | 357 | 17 | 355 | Auxin response factor 1 |
4ldw_A | 1e-175 | 21 | 357 | 17 | 355 | Auxin response factor 1 |
4ldw_B | 1e-175 | 21 | 357 | 17 | 355 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009764747.1 | 0.0 | PREDICTED: auxin response factor 9-like isoform X1 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A1U7V9N8 | 0.0 | A0A1U7V9N8_NICSY; Auxin response factor | ||||
STRING | XP_009764747.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2347 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.2 | 0.0 | auxin response factor 9 |