PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00119g08004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 280aa MW: 30336.7 Da PI: 9.3073

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00119g08004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.8e-39	70	128	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + lkcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGa+rnvPvGgg+r+nk+s+ Niben101Scf00119g08004.1 70 AGLKCPRCDSTNTKFCYFNNYSLSQPRHFCKSCRRYWTRGGAMRNVPVGGGCRRNKRSK 128 6789****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-33	52	121	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-32	71	126	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.693	72	126	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	74	110	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MIFSSFPVYL DHPNLQQLQQ SDHQQGNPAL EDRQLSSHQP PAQAGGGLGS IRPGSMVHRA 60 RMAKIPLAEA GLKCPRCDST NTKFCYFNNY SLSQPRHFCK SCRRYWTRGG AMRNVPVGGG 120 CRRNKRSKSS NNDNNISKSA GGQMGNSNVI VSTSASPSSC SMEIIGHQFS QPSTQFTPLM 180 AAFHNLNNYG AGFGTEMGFQ IANNNNNNLL PSLAANFEHI TEGPIEASNG VSQVSPPVKM 240 ESNSTKQFLG SLENNQYWGG ANSWTGFSGL NNSSTTSHIL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019235411.1	1e-150	PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBL	A0A1J6K7A1	1e-149	A0A1J6K7A1_NICAT; Dof zinc finger protein dof5.1
STRING	XP_009777580.1	1e-147	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	2e-43	OBF-binding protein 3