PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00113g04002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 287aa MW: 32976.5 Da PI: 4.3942

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00113g04002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31	4.4e-10	57	135	3	88
EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 k+l s +g+l +p+k a ++ + +++ l+ d++ ++ +v+l + ++y++t+ W++F ++++Lk +D vv++ ++ Niben101Scf00113g04002.1 57 KQL--SEDDITGQLQIPRKLA-HYlQ--SPG---LQSADLDEQECQVELVRNMEEDEYYMTGEWENFLQEHQLKPKDLVVIEISD 133 555..44444567*****9.6633..334...8889999****88888888***********************765 PP SS CS B3 87 rs 88 ++ Niben101Scf00113g04002.1 134 NQ 135 43 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.3E-8	51	140	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.49E-7	51	138	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.36E-7	54	130	No hit	No description
Pfam	PF02362	3.5E-8	58	136	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MEENSGLHET LLENEKNDNF HEMAANKSRT ASLKIKGNPL GTAWVYRDEN RKLFLEKQLS 60 EDDITGQLQI PRKLAHYLQS PGLQSADLDE QECQVELVRN MEEDEYYMTG EWENFLQEHQ 120 LKPKDLVVIE ISDNQRLRID YISDQRAIDN HLPKKQVEEN LNDLPLPGEI PLALFDPMGN 180 NIVEMKLVHS SEEDGYYIGG GEWKEYAVKH NLLTSDTKIL DKVTVHNDDH ELNNHYEISY 240 QRGSSKESKK LDAAAAATTT VGIGDNKKGD DQSEYEGDLE SFWLWLV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009791936.1	1e-168	PREDICTED: uncharacterized protein LOC104239104
TrEMBL	A0A1U7XQN4	1e-167	A0A1U7XQN4_NICSY; uncharacterized protein LOC104239104
STRING	XP_009791936.1	1e-167	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14354	3	4