PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00109g02027.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 167aa    MW: 18940.8 Da    PI: 8.3193
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00109g02027.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.72.1e-27201581128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...sg 81 
                               lp GfrF+Ptdeel+v+yL +k+ + +l++  +i+e+ d++++  +dLp  +   +++ yfFsk++    ++  ++ +     sg
  Niben101Scf00109g02027.1  20 LPIGFRFRPTDEELLVHYLSRKIFSMPLPA-LIIPEIlDVFDSFASDLPGDL---REKRYFFSKSNGDIDSNGCSRMISGkdcSG 100
                               699**************************9.5688888***********543...4578****999887654433332223559* PP

                       NAM  82 yWkatgkdkevlsk.........kgel....vglkktLvfykgrapkgektdWvmheyrl 128
                               yWka g+++ +++          +  +     g+kk L fy+ +++   +t+W+mh+y+l
  Niben101Scf00109g02027.1 101 YWKAVGQSQLIMVPisdsaiserQ--QhrllLGMKKALRFYQTTRSGCLRTRWIMHQYSL 158
                               ************998877776541..15666**********99999999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-3115159IPR003441NAC domain
PROSITE profilePS5100531.38920167IPR003441NAC domain
PfamPF023657.8E-2021158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MEEQKECPKP GEGTVGSLNL PIGFRFRPTD EELLVHYLSR KIFSMPLPAL IIPEILDVFD  60
SFASDLPGDL REKRYFFSKS NGDIDSNGCS RMISGKDCSG YWKAVGQSQL IMVPISDSAI  120
SERQQHRLLL GMKKALRFYQ TTRSGCLRTR WIMHQYSLVT ISSSDQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-191615811140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767338.11e-105PREDICTED: NAC domain-containing protein 68-like isoform X2
RefseqXP_016459882.11e-105PREDICTED: NAC domain-containing protein 41-like isoform X2
TrEMBLA0A1S3Z6P21e-104A0A1S3Z6P2_TOBAC; NAC domain-containing protein 41-like isoform X2
TrEMBLA0A1U7VLV11e-104A0A1U7VLV1_NICSY; NAC domain-containing protein 68-like isoform X2
STRINGXP_009767337.11e-103(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132501318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-31NAC domain containing protein 83