PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00096g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 432aa    MW: 49624 Da    PI: 6.0546
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00096g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.42.1e-30271325155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               k+r+rW ++LHerF+e+v++LGG++kAtPk+il+lm+ +gLtl+hvkSHLQkYR 
  Niben101Scf00096g00004.1 271 KTRIRWREDLHERFLECVNRLGGADKATPKQILNLMDSEGLTLDHVKSHLQKYRN 325
                               68****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.815268328IPR017930Myb domain
SuperFamilySSF466891.27E-14270325IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-26270326IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-24271326IPR006447Myb domain, plants
PfamPF002491.8E-6275324IPR001005SANT/Myb domain
PfamPF143791.3E-19356403IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MSIQRIFTQD RAHQSNELPS DYTLKCPKIS SQDLVAQQQY SSYMGFCFHP EDGRRQQHQQ  60
TCNLPIATAS SNTIISFFGS PTSAFFATER CLGLTQHDNQ DNTSQLMLNN NDLNQDHTSQ  120
FMIDNYDLNQ DNTSHLINNY DIQLSSYDPQ QSRNGFLADS IAQAEPDFQH NISLPPFIRP  180
ELSTSQPLSR QYSFSDIPEN EKMLHLKNEL LGEFDTSYRM HPSIPFDGNQ NYRISHDFCG  240
CPLEKMRQQC TSPSLTSHNS TSSGVSNKHC KTRIRWREDL HERFLECVNR LGGADKATPK  300
QILNLMDSEG LTLDHVKSHL QKYRNAKHIP ESTETGKSEK RNSPDNVTEI EGKTGIEIKE  360
ALKMQLEVQR CLHEQLETQR TLQMRIEEQA KKLKRILDQQ QRTNRNLLER QNSSISSPAQ  420
DNAEILDVED SE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-19271328259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-19271328259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-19271328158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-19271328158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-19271328158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-19271328158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-19271328259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-19271328259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-19271328259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-19271328259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-19271328259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-19271328259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788985.10.0PREDICTED: uncharacterized protein LOC104236700 isoform X1
RefseqXP_016433946.10.0PREDICTED: uncharacterized protein LOC107760416 isoform X1
TrEMBLA0A1S3X2990.0A0A1S3X299_TOBAC; uncharacterized protein LOC107760416 isoform X1
TrEMBLA0A1U7XR950.0A0A1U7XR95_NICSY; uncharacterized protein LOC104236700 isoform X1
STRINGXP_009788985.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24912458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.13e-50G2-like family protein