PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00066g02006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 745aa    MW: 84196.2 Da    PI: 5.9042
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00066g02006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.34.1e-1123727422373
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                               ++lL++cA+ v+++d + a++ L+++++++sp+gd+ qRla++f+ +L+arla+++++ y+al+p++ +    +e+l+a++++  
  Niben101Scf00066g02006.1 372 RTLLISCAQSVAADDRRTANEQLKHIRQHSSPTGDAYQRLASVFADGLEARLAGTGTQQYAALAPKRIT---AAEKLKAYQVYLS 453
                               789*************************************************************99999...9************ PP

                      GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169
                                +P+ k+s l aN++I   +++++++H iDf+i++G+QWp L+q L++ p+gpp+lRiTg++ +++g   +e+le+tg+rLak++
  Niben101Scf00066g02006.1 454 SCPFKKISILFANKMIFHTASNARTLHLIDFGITYGFQWPILIQLLSQIPGGPPNLRITGIDLSQPGfrPAESLEQTGSRLAKYC 538
                               ***************************************************************999999**************** PP

                      GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                               e+++vpfe+n+++++++e+++le+L++ +gE++aVn+ ++l++llde+v ++s+rd+vL+l+++++P+++v +  + +++++ F+
  Niben101Scf00066g02006.1 539 ERFHVPFEYNAIATQNWENIKLEDLKLASGETVAVNCLFRLKNLLDETVVVDSPRDAVLSLIRKMNPDIFVQAVVNGSYSAPFFV 623
                               ************999********************************************************************** PP

                      GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                               +rf eal +ys+lfd+++a+lpr++++r   E+e+ +re++nv+aceg+er+er et+++W+ r ++aGFk +pl+++ +++ ++
  Niben101Scf00066g02006.1 624 TRFREALFHYSTLFDMFDATLPRDDQQRLHFEQEFYRREAMNVIACEGSERVERPETYKQWQVRYMRAGFKLLPLNQQLMQKLRC 708
                               ************************************************************************************* PP

                      GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                ++    + +  +e+ +++++gWk+r + + S+W
  Niben101Scf00066g02006.1 709 KVKGGCHRDFVFDEDGNWMLQGWKGRVVCASSCW 742
                               **9988788************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.635345723IPR005202Transcription factor GRAS
PfamPF035141.4E-109372742IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MDPRFNPLPH PVNTFEFEDQ INLSSFEESL NHPLSYTDNY LAFGAPYNTS SPDIGNFAPS  60
SNVSSEVDSP DDHDSDSLFK YLNQILMEEN IEDKPSMFHD PLALKAAEKS FYEALGKSYP  120
PSPYRTSDYV YHQLKSPDSI FWNSSEHSTS SSNTGTNSTD PQWVVDPGES RLPVESHPSE  180
YNVQPLVQSN SERSRGSLNN FNNSNAHVDS LVNPNVFTHS ESILQFKRGM EEASKFLPNL  240
SQFVIDLDKY TLPPKMEEVS KEAVVKVEKD EKNHSPNGTK GRKHQYPEDS DHEDERSNKQ  300
SAIYAEEEVE LSEMFDRVLL CTDKGTGCGD VKREMPSEVN KSSDQNGQAH GSNGGKTRAK  360
KQGTKNEAVD IRTLLISCAQ SVAADDRRTA NEQLKHIRQH SSPTGDAYQR LASVFADGLE  420
ARLAGTGTQQ YAALAPKRIT AAEKLKAYQV YLSSCPFKKI SILFANKMIF HTASNARTLH  480
LIDFGITYGF QWPILIQLLS QIPGGPPNLR ITGIDLSQPG FRPAESLEQT GSRLAKYCER  540
FHVPFEYNAI ATQNWENIKL EDLKLASGET VAVNCLFRLK NLLDETVVVD SPRDAVLSLI  600
RKMNPDIFVQ AVVNGSYSAP FFVTRFREAL FHYSTLFDMF DATLPRDDQQ RLHFEQEFYR  660
REAMNVIACE GSERVERPET YKQWQVRYMR AGFKLLPLNQ QLMQKLRCKV KGGCHRDFVF  720
DEDGNWMLQG WKGRVVCASS CWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-463547441379Protein SCARECROW
5b3h_D7e-463547441379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764837.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A1U7V9X20.0A0A1U7V9X2_NICSY; scarecrow-like protein 14
STRINGXP_009764837.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]