PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00063g11003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 493aa MW: 53803.1 Da PI: 6.7677

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00063g11003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.5e-39	148	208	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Niben101Scf00063g11003.1 148 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNSA 208 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	145	205	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.0E-32	150	206	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.919	152	206	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	154	190	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MRQVKDPEIK LFGKKIALPE NGKTLTVIIS GEDSVVVKPS GAKESSSGWN RDPCLVDMEA 60 SSPDESDDGS EYENEKADKD QVRRELAEDT SEEKDQDQVM KESENPKSPS ESENKPKTPP 120 LGDESPTVKT SKTENDATDS QQKTLKKPDK ILPCPRCNSM DTKFCYYNNY NVNQPRHFCK 180 SCQRYWTAGG TMRNVPVGAG RRKNKNSASH CHHIMISEAL QAARIDPPNG FHHPMLKPNG 240 TVLSFGPDSP LCDSMASVMN LPEKKTPNGI RNGYYKQEHK NPSCIGGENV DDCSSGSSVT 300 TNSMTEGGKN RPPEALMQNM NGFPSPVPCL PGVPWPFPYA AVPFPAMNPA AFPMPFCPPP 360 YWNCNVPGPW SIPWLAPPSS TANQNGSGSS PSSPLGKHSR DGDLLRPNNP EGQKNSEGSV 420 LVPKTLRIDD PDEAAKSSIW STLGINYDSV SRGGLFKGFQ PKSSEKDHPA TTSPVLQANP 480 VAFSRSLIFQ ERA

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MRQVKDPEIK LFGKKIALPE NGKTLTVIIS GEDSVVVKPS GAKESSSGWN RDPCLVDMEA  60
SSPDESDDGS EYENEKADKD QVRRELAEDT SEEKDQDQVM KESENPKSPS ESENKPKTPP  120
LGDESPTVKT SKTENDATDS QQKTLKKPDK ILPCPRCNSM DTKFCYYNNY NVNQPRHFCK  180
SCQRYWTAGG TMRNVPVGAG RRKNKNSASH CHHIMISEAL QAARIDPPNG FHHPMLKPNG  240
TVLSFGPDSP LCDSMASVMN LPEKKTPNGI RNGYYKQEHK NPSCIGGENV DDCSSGSSVT  300
TNSMTEGGKN RPPEALMQNM NGFPSPVPCL PGVPWPFPYA AVPFPAMNPA AFPMPFCPPP  360
YWNCNVPGPW SIPWLAPPSS TANQNGSGSS PSSPLGKHSR DGDLLRPNNP EGQKNSEGSV  420
LVPKTLRIDD PDEAAKSSIW STLGINYDSV SRGGLFKGFQ PKSSEKDHPA TTSPVLQANP  480
VAFSRSLIFQ ERA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009619973.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	A0A1J6K765	0.0	A0A1J6K765_NICAT; Cyclic dof factor 3
STRING	XP_009619973.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-95	cycling DOF factor 3