PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00043g03010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 197aa    MW: 22787.6 Da    PI: 6.4157
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00043g03010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.82.7e-1483141563
                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                               ++ rr+++NRe+ArrsR RK++ ++eL   v  L +eN+ L+++l++ ++  +++ +e+
  Niben101Scf00043g03010.1  83 RKKRRMISNRESARRSRMRKQKHLDELWSQVLRLRTENHNLIDKLNQVSDCHERVLQEN 141
                               6889********************************************99988888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.880.104.5E-45097IPR008917Transcription factor, Skn-1-like, DNA-binding domain
SMARTSM003384.8E-1579143IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.77281144IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.45E-1283132No hitNo description
PfamPF001702.3E-1283141IPR004827Basic-leucine zipper domain
CDDcd147022.94E-2184134No hitNo description
PROSITE patternPS00036086101IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-1198156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MIPSEAAAIH YFASENTSPL PLDFNFMHNN LPSLQFSRYL TNLPNYPTTF PVHDFNNLPP  60
SCISGNSTSD EADEQQLRII DERKKRRMIS NRESARRSRM RKQKHLDELW SQVLRLRTEN  120
HNLIDKLNQV SDCHERVLQE NAELKQEASD LRQMLTHLQI NSPFPDLIDL EDIPCTTAHL  180
KAESSNLSIT PCTNLLH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
182103RKKRRMISNRESARRSRMRKQK
295102RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774323.11e-139PREDICTED: basic leucine zipper 43-like
RefseqXP_016460448.11e-139PREDICTED: basic leucine zipper 43-like
SwissprotQ9FMC23e-35BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A1S3Z7S01e-138A0A1S3Z7S0_TOBAC; basic leucine zipper 43-like
TrEMBLA0A1U7W6T01e-138A0A1U7W6T0_NICSY; basic leucine zipper 43-like
STRINGXP_009774323.11e-139(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9472492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.11e-45basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]