PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00034g04018.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 433aa    MW: 49298.1 Da    PI: 8.2376
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00034g04018.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.61.6e-118871398
                              TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                        B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                              ++  ++p +fa+++ ++  ++  + le +sg++Wev++    ++g+++l+ GW++F +   +  g f++F ++ rs f  +v++f+
  Niben101Scf00034g04018.1  8 LCAQRIPEDFASRYCKNMLNP--VYLEVPSGEVWEVEV--VHSRGQIYLGIGWQDFSDFYSISCGHFLMFGYNARSHF--NVTIFD 87
                              56679*********5454444..***************..999999**************************999999..999987 PP
2B355.11.4e-17210291489
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                + ps+v++ ++l++p kfa+++ +++++  +l+l+ + +  W+vk+  + + +  +l  GWk Fv +n+Lk gD++v+++++++
  Niben101Scf00034g04018.1 210 FMHPSYVTRPHNLYIPLKFARKYFMQNRG--KLVLRVPGSGFWTVKC--TLRMRNAILNCGWKAFVLDNKLKLGDVCVLEVIKDN 290
                               5789*******************777555..7***************..77777899***********************99864 PP

                               E CS
                        B3  89 e 89 
                               +
  Niben101Scf00034g04018.1 291 K 291
                               4 PP
3B349.29.6e-16339428498
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                + ps+v+  + l++++  a+++     +   ++l+ ++ rsW +++++  k gr  l +GWk+Fv++n++k+gD++vF+ ++r+
  Niben101Scf00034g04018.1 339 SMQPSYVSGPS-LTISRVIASKFFPT--RYSGVVLQVPNKRSWALNCTVGTKNGR--LNSGWKKFVQDNNIKVGDVCVFEQVSRT 418
                               45566666665.99999999888533..3336***************77555555..***********************88889 PP

                               EE..EEEEE- CS
                        B3  89 efelvvkvfr 98 
                               +f ++v +f 
  Niben101Scf00034g04018.1 419 RFLFNVYIFP 428
                               9988888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.434189IPR003340B3 DNA binding domain
SMARTSM010190.0064189IPR003340B3 DNA binding domain
CDDcd100173.18E-10487No hitNo description
PfamPF023623.3E-8887IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-15989IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-15989IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.8E-24199299IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-21200293IPR015300DNA-binding pseudobarrel domain
CDDcd100175.98E-18205301No hitNo description
SMARTSM010192.3E-14206303IPR003340B3 DNA binding domain
PROSITE profilePS5086312.449207301IPR003340B3 DNA binding domain
PfamPF023628.2E-16209292IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-22328427IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.94E-21329427IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-18334428No hitNo description
PROSITE profilePS5086312.139335430IPR003340B3 DNA binding domain
PfamPF023625.4E-14336428IPR003340B3 DNA binding domain
SMARTSM010197.5E-12336430IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MKLSAYFLCA QRIPEDFASR YCKNMLNPVY LEVPSGEVWE VEVVHSRGQI YLGIGWQDFS  60
DFYSISCGHF LMFGYNARSH FNVTIFDLSA SEIEYPTKEI ESDDSINISD VVEHSVENLS  120
HGPLGQERKR KRQEGEAEDD IPVNVQTKVI EEEKSQGNVV SPERSEGCRE QEQQSNIATS  180
KSDAERDRER AENYQRAKAF KSKNPFIISF MHPSYVTRPH NLYIPLKFAR KYFMQNRGKL  240
VLRVPGSGFW TVKCTLRMRN AILNCGWKAF VLDNKLKLGD VCVLEVIKDN KLLLIDVTIF  300
PGVSDSTNES INPEPSVPCS PAYQRAKAFT SENPFFIYSM QPSYVSGPSL TISRVIASKF  360
FPTRYSGVVL QVPNKRSWAL NCTVGTKNGR LNSGWKKFVQ DNNIKVGDVC VFEQVSRTRF  420
LFNVYIFPAV EGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1417430018140B3 domain-containing transcription factor VRN1
4i1k_B4e-1417430018140B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019256832.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A1J6HTV50.0A0A1J6HTV5_NICAT; B3 domain-containing transcription factor vrn1
STRINGXP_009800785.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-34B3 family protein