PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00034g04002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 460aa    MW: 52217.6 Da    PI: 7.923
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00034g04002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.95.4e-11381191198
                               HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                        B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                                 ++  ++p +fa+++ ++  ++  + le +sg++Wev++   ++ g+++l  GW++F +   +  g f++F ++ rs f  +v+
  Niben101Scf00034g04002.1  38 YFLCAQRIPEDFASRYCKNMLNP--VYLEVPSGEVWEVEV--VRSLGQIYLDIGWQDFSDFYSISCGHFLMFGYNARSHF--NVT 116
                               5567779*********5454444..***************..********************************999999..999 PP

                               EE- CS
                        B3  96 vfr 98 
                               +f+
  Niben101Scf00034g04002.1 117 IFD 119
                               987 PP
2B353.54.4e-17237323494
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                + ps+v++ + l++p +fa+++ +++++  +l+l  + +  W+vk++   +     +t GWk Fv +n+Lk+gD++v++++++s
  Niben101Scf00034g04002.1 237 FMHPSYVTRPHSLSIPLTFARKYFMQNRG--KLVLHVPGSGFWTVKCT--LRTLNAKITCGWKAFVLDNKLKSGDVCVLEVIKDS 317
                               5789*******************777555..7***************5..44445669**********************99986 PP

                               EE..EE CS
                        B3  89 efelvv 94 
                               +  lvv
  Niben101Scf00034g04002.1 318 KLLLVV 323
                               664443 PP
3B351.71.6e-16366455498
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                + ps+v+  + l++++  a+++   +++  +++l+ ++ rsW +++++ +k gr  l +GWk+Fv++n++k+gD++vF+ ++r+
  Niben101Scf00034g04002.1 366 PMQPSYVSGPS-LTISRVIASKFF--PTRYSDVVLQVPNKRSWALNCTVGRKNGR--LNSGWKKFVQDNNIKVGDVCVFEQVSRT 445
                               56677777776.999999998886..345559***************77666666..***********************88889 PP

                               EE..EEEEE- CS
                        B3  89 efelvvkvfr 98 
                               +f ++v +f 
  Niben101Scf00034g04002.1 446 RFLFNVYIFP 455
                               9988888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.01232121IPR003340B3 DNA binding domain
CDDcd100171.45E-936119No hitNo description
PfamPF023621.1E-739119IPR003340B3 DNA binding domain
SuperFamilySSF1019361.49E-1339121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-1441121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.70145121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-22226322IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-20227323IPR015300DNA-binding pseudobarrel domain
CDDcd100171.62E-16232328No hitNo description
SMARTSM010192.3E-13233330IPR003340B3 DNA binding domain
PROSITE profilePS5086312.294234327IPR003340B3 DNA binding domain
PfamPF023621.5E-14237323IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-23355454IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-21356454IPR015300DNA-binding pseudobarrel domain
CDDcd100179.74E-19361455No hitNo description
PROSITE profilePS5086312.167362457IPR003340B3 DNA binding domain
SMARTSM010192.2E-13363457IPR003340B3 DNA binding domain
PfamPF023621.4E-14367455IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MWNNLTYVEP NADCAGIYCQ LYRCATVLIP RCMKLSAYFL CAQRIPEDFA SRYCKNMLNP  60
VYLEVPSGEV WEVEVVRSLG QIYLDIGWQD FSDFYSISCG HFLMFGYNAR SHFNVTIFDL  120
SASEIEYPTK EIESDDSVDI SDVVEHSVEN LSHGPLGQER KRKRQADDIP VNNQTIIEEE  180
TSQGNVVSLE RSEGCREQEQ QSNIVTSKSD AERVKERAEN YQRAKAFKSK NPFIISFMHP  240
SYVTRPHSLS IPLTFARKYF MQNRGKLVLH VPGSGFWTVK CTLRTLNAKI TCGWKAFVLD  300
NKLKSGDVCV LEVIKDSKLL LVVVTIFPGV SDSTNESINP EPSVPCSPAY QKAKAFTSEN  360
PFFIYPMQPS YVSGPSLTIS RVIASKFFPT RYSDVVLQVP NKRSWALNCT VGRKNGRLNS  420
GWKKFVQDNN IKVGDVCVFE QVSRTRFLFN VYIFPAVEGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1321532632140B3 domain-containing transcription factor VRN1
4i1k_B3e-1321532632140B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016475122.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A1S4AEL80.0A0A1S4AEL8_TOBAC; B3 domain-containing transcription factor VRN1-like
STRINGXP_009774258.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-24B3 family protein