PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00024g03019.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 247aa MW: 27380 Da PI: 4.5121

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00024g03019.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	31	7.1e-10	1	44	58	101
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 m+s++y+A+ar + PvyG+v+ i++l +++ ++el++++++l Niben101Scf00024g03019.1 1 MKSIIYQANARDKHPVYGCVAEIQNLVFNIQLYEEELQAVHAQL 44 89*************************************99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.249	1	44	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-7	1	41	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MKSIIYQANA RDKHPVYGCV AEIQNLVFNI QLYEEELQAV HAQLAFYRQQ QQHQQQEISS 60 TALSDSVSHI QLGMPPPPAV APPPPPPQAT NGNGLTLFHQ DAPSQQYNAA INANALPVQS 120 YPSYSNNSYA AYNNNTTFVD LKENNAVNSL WIQQSYGNSA CNNNTMIMQS QLPASQSISV 180 PPEVTHDYDE IHPFFDTIDD RQSYIDSKEA YDSSSESSLK DTRHSVEHVA ENELKSAAAC 240 FTLTSVN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019244725.1	1e-145	PREDICTED: LOB domain-containing protein 27-like
TrEMBL	A0A1J6J4U1	1e-144	A0A1J6J4U1_NICAT; Lob domain-containing protein 27
STRING	XP_009777754.1	1e-137	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1449	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	2e-10	LOB domain-containing protein 27