PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg15860g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 302aa    MW: 34865.5 Da    PI: 8.4453
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg15860g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.54.6e-48251552128
                       NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                                pGfrFhPtdeelv +yL+ kve++++++ e ik++diyk++ wdLpk+ + ++kewyfF+kr +ky+++ r+nr+t sg+Wkat
  Niben101Ctg15860g00004.1  25 LPGFRFHPTDEELVGFYLQGKVEKRPITI-ELIKQIDIYKYDRWDLPKSSNMGDKEWYFFCKRGRKYRNSIRPNRVTGSGFWKAT 108
                               69***************************.89***************988999******************************** PP

                       NAM  87 gkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               g d++++s+     ++e +glkk+Lv+y+g++ kg+ktdW+mhe+rl
  Niben101Ctg15860g00004.1 109 GIDRPIYSTfgegrRHECIGLKKSLVYYRGSTGKGTKTDWMMHEFRL 155
                               ********9988777777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-5222186IPR003441NAC domain
PROSITE profilePS5100551.33924186IPR003441NAC domain
PfamPF023651.7E-2426155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEVENLSSMV TVSNYTEEEE EDVILPGFRF HPTDEELVGF YLQGKVEKRP ITIELIKQID  60
IYKYDRWDLP KSSNMGDKEW YFFCKRGRKY RNSIRPNRVT GSGFWKATGI DRPIYSTFGE  120
GRRHECIGLK KSLVYYRGST GKGTKTDWMM HEFRLPAEND KSTKHIEAKS IAQEAEVWTL  180
CRIFKRNGSY RKCLPYWRFV AAAKRHPIDT SSKTCSADSS DYIISFGAPV MRPHNNITET  240
KPFSGHVHDI SNNSQLLMGQ LSSVRQAPAA SHTLAPDMNE LLKHGDWEEL RSFLDLAVDP  300
FF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-472619222174NAC domain-containing protein 19
3swm_B1e-472619222174NAC domain-containing protein 19
3swm_C1e-472619222174NAC domain-containing protein 19
3swm_D1e-472619222174NAC domain-containing protein 19
3swp_A1e-472619222174NAC domain-containing protein 19
3swp_B1e-472619222174NAC domain-containing protein 19
3swp_C1e-472619222174NAC domain-containing protein 19
3swp_D1e-472619222174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778771.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
RefseqXP_016515497.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK554e-86NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1S4DPZ30.0A0A1S4DPZ3_TOBAC; transcription factor JUNGBRUNNEN 1-like
TrEMBLA0A1U7WNA20.0A0A1U7WNA2_NICSY; transcription factor JUNGBRUNNEN 1-like
STRINGXP_009778771.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16972469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-88NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]