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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Ctg13932g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 193aa MW: 21578.4 Da PI: 5.8351 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 66.8 | 4.2e-21 | 44 | 192 | 161 | 324 |
GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe 245 ++L fA+++++++++n + l++l+ + ++ +++E l+++ +l+lh+l ++s + + sl+Pk vv++e++ Niben101Ctg13932g00004.1 44 FSSQLLAFAKAININLQINRMENYPLQNLDSQVINSSSDEILVICAQLRLHNLKHNSPDERT----------SLEPKGVVLSENN 118 56899***************8777*****************************966666665..........9************ PP GRAS 246 adh..ns.esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324 +d+ ns ++F+++f++ +ey ++++ds+++ + + r Er++++ e+ +++++ g++ +e++ekW er++++GF Niben101Ctg13932g00004.1 119 MDCscNScGDFATGFARQVEYLWKFLDSISVAY----KGREGAERRMMEGEAAKALTNMGEM----NERKEKWCERMQTVGF 192 8875444259*******************9995....89999999999*************9....88888**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 12.994 | 1 | 193 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-18 | 44 | 192 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MANVARGVDP SIRRAATIGS SNSYIENDQL RNSPFVIGPA GYNFSSQLLA FAKAININLQ 60 INRMENYPLQ NLDSQVINSS SDEILVICAQ LRLHNLKHNS PDERTSLEPK GVVLSENNMD 120 CSCNSCGDFA TGFARQVEYL WKFLDSISVA YKGREGAERR MMEGEAAKAL TNMGEMNERK 180 EKWCERMQTV GFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009594760.1 | 1e-108 | PREDICTED: nodulation-signaling pathway 1 protein-like | ||||
Refseq | XP_016457577.1 | 1e-108 | PREDICTED: nodulation-signaling pathway 1 protein-like | ||||
Swissprot | Q4VYC8 | 3e-79 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A1S3Z0D8 | 1e-106 | A0A1S3Z0D8_TOBAC; nodulation-signaling pathway 1 protein-like | ||||
STRING | XP_009594760.1 | 1e-107 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4949 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 4e-45 | GRAS family protein |
Publications ? help Back to Top | |||
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