PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg13673g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 147aa    MW: 16270.6 Da    PI: 8.493
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg13673g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF551e-171158148
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                              k+i  ++ r vtfskRr+g++KKA+EL  +++a+va i+fs+tgk y+
  Niben101Ctg13673g00002.1 11 KQIMKETSRVVTFSKRRKGLFKKASELESMTGARVAAIVFSPTGKPYT 58
                              57888999************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-22362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.703363IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-21463IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-14525IPR002100Transcription factor, MADS-box
PfamPF003195.7E-211358IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-142540IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-144061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MGTGKKKIEI KQIMKETSRV VTFSKRRKGL FKKASELESM TGARVAAIVF SPTGKPYTCG  60
DVNSAIDRHF SSSIDPLSGS GNISSGSSGS RSTPLRLRNG LCNWLENIDI EECENLNELL  120
LLKEQLEGTR EKLMSTEDFE SFLALFM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508956.11e-67PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A1S4D6G02e-66A0A1S4D6G0_TOBAC; agamous-like MADS-box protein AGL29
STRINGXP_009603478.14e-66(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-14AGAMOUS-like 61