PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg13582g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 137aa    MW: 15549.7 Da    PI: 6.7737
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg13582g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.56e-132280563
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                              ++ +r+++NRe+ArrsR +K++ +  L   v +L+ +N +   ++++ ++ + ++++e+
  Niben101Ctg13582g00001.1 22 RKRKRMISNRESARRSRMKKQKHLCDLMVQVNQLKDQNNQIVTNINMVTQVCLNVEAEN 80
                              6789************************************************9998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.2E-111271No hitNo description
SMARTSM003387.2E-151882IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.7372071IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-122275No hitNo description
PfamPF001704.9E-92273IPR004827Basic-leucine zipper domain
CDDcd147023.88E-172371No hitNo description
PROSITE patternPS0003602540IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MASSPSGTSS GSEDIQQLMD QRKRKRMISN RESARRSRMK KQKHLCDLMV QVNQLKDQNN  60
QIVTNINMVT QVCLNVEAEN SVLRAQMAEL SHRLQSLNEI INCINSAATI IDDTEVNGED  120
DFLNPWNLLH VNQPIMA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12142RKRKRMISNRESARRSRMKKQK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019236181.19e-83PREDICTED: bZIP transcription factor 11-like
SwissprotC0Z2L56e-39BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A1J6K1K02e-81A0A1J6K1K0_NICAT; Bzip transcription factor 11
STRINGXP_009624531.17e-82(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53724123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.11e-39basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]