PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg12301g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 286aa    MW: 33069 Da    PI: 6.1081
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg12301g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM24.86e-08141233128
                       NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkat 86 
                                GfrF+Ptdeel+ +yL k v+ k++++ e        + +Pwd+    ++       F   d+k+    +k+r  t+    +  
  Niben101Ctg12301g00003.1  14 LGFRFRPTDEELI-RYLLKFVSCKSFSC-E-----LYGNKKPWDIF---ES-----N-FLGDDTKE----QKRRiFTD---RRRL 75 
                               6************.9**********888.2.....234679****5...22.....2.55555543....44552333...3566 PP

                       NAM  87 gkdkevlskkgelvglkktLvfykgrapkge.......ktdWvmheyrl 128
                                ++k+v++ +++lvg kk++ + ++++++ +       +  W m+ey+l
  Niben101Ctg12301g00003.1  76 LENKSVFK-GSKLVGFKKSFRYLEKDSRTEKsvdqgiqNIVWNMKEYSL 123
                               78899999.9999*********954333222122333367899999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-1310149IPR003441NAC domain
PfamPF023655.4E-915123IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MTSSSHNYGP NPVLGFRFRP TDEELIRYLL KFVSCKSFSC ELYGNKKPWD IFESNFLGDD  60
TKEQKRRIFT DRRRLLENKS VFKGSKLVGF KKSFRYLEKD SRTEKSVDQG IQNIVWNMKE  120
YSLNYNILKF LRQRNIIQHE DYVLCCIKRE HIEIADSGNN VVAVMNTMLL TTQDHELDRV  180
TTSSEDEGTG FHDLCRSNQF TSSENNNAFD QLQAQNIEEM APSVQSHVEY VGSSSTTSNQ  240
YHSNIECDDR ATVPSTLVEI KNNIDHVDMK VYEYMGSLLA EKSNTA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016483213.11e-157PREDICTED: NAC domain-containing protein 76-like
TrEMBLA0A1S4B3451e-156A0A1S4B345_TOBAC; NAC domain-containing protein 76-like
STRINGXP_009798779.11e-153(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10426625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.17e-08NAC domain containing protein 2