PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Ctg11776g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 200aa MW: 20554.6 Da PI: 7.2082

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Ctg11776g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.4	2.4e-36	1	53	9	61
zf-Dof 9 prCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 prCdstntkfCyynny+lsqPr+fCk+CrryWt+GG+lrn+PvGgg+rkn ++ Niben101Ctg11776g00001.1 1 PRCDSTNTKFCYYNNYNLSQPRHFCKSCRRYWTRGGTLRNIPVGGGTRKNSSH 53 8************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	28.015	1	52	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-22	1	49	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.7E-31	1	52	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
PRCDSTNTKF CYYNNYNLSQ PRHFCKSCRR YWTRGGTLRN IPVGGGTRKN SSHKRSRNTT 60 SVTAQESVNA TPITIIGSGQ SSGSGSVSFM GCEVNLNESV QEAGGATNGT FTSLLTGPVG 120 GGFVPLGGFG LGLGGFGLGN LDWPMEQVGG GNGGGGDGGE NMKWQLSSGE IEAGGGGIGD 180 DDCFGNWPDL AISAPGTSLK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009592897.1	1e-139	PREDICTED: dof zinc finger protein DOF3.4-like
Refseq	XP_016447560.1	1e-139	PREDICTED: dof zinc finger protein DOF3.4-like
TrEMBL	A0A1S3Y655	1e-138	A0A1S3Y655_TOBAC; dof zinc finger protein DOF3.4-like
STRING	XP_009592897.1	1e-139	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-31	DOF zinc finger protein 1