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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Ctg09867g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | CPP | ||||||||
Protein Properties | Length: 198aa MW: 21623.1 Da PI: 8.2635 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 53.7 | 4e-17 | 2 | 40 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN Niben101Ctg09867g00003.1 2 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 40 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 20.207 | 1 | 42 | IPR005172 | CRC domain |
SMART | SM01114 | 7.5E-18 | 2 | 43 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.2E-12 | 4 | 40 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
ARHKRGCNCK KSGCLKKYCE CYQGGVGCSI NCRCEGCKNA FGRKDGSINI GTDGDAEEEE 60 TDSYEKSIVD RTSHKNLVQS DIEQNPDSAH PATPLSFGRP PMQLPFSLKN KPPRSSFLSI 120 GSSSGGIYAA GQEVGRPNFF QPQPKFDKPF ESVQVQEDEM PEILQGTKSP VSGIRTASPN 180 RKRVSPPHCN YGNSHSHS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009770238.1 | 1e-124 | PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
Swissprot | Q9LUI3 | 1e-45 | TSO1_ARATH; CRC domain-containing protein TSO1 | ||||
TrEMBL | A0A1U7VV37 | 1e-122 | A0A1U7VV37_NICSY; protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
STRING | XP_009770238.1 | 1e-123 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2467 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 3e-40 | Tesmin/TSO1-like CXC domain-containing protein |
Publications ? help Back to Top | |||
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