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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Ctg04686g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 204aa MW: 22704.9 Da PI: 6.6323 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 267.6 | 4.1e-82 | 2 | 204 | 84 | 285 |
GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166 ++e++P++kf+++ aN aI ea++ e+rvHiiDf+i qG QW++L+qa+a+Rp+gpp++R+Tg+++++s + l+ +g+rL+ Niben101Ctg04686g00002.1 2 LYEICPYFKFGYMSANGAIAEAMKDENRVHIIDFQIAQGSQWVTLIQAFAARPGGPPHIRVTGIDDSTSAyaRGGGLNIVGQRLS 86 89****************************************************************998899999********** PP GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251 k+A++++vpfef++ +a + +d+++e+L ++pgEalaVn+++ lh+++desvs+e++rd++L++vk+l+Pkvv++veqe+++n++ Niben101Ctg04686g00002.1 87 KLAKAFKVPFEFHA-AAISGSDVQVENLGIQPGEALAVNFAFTLHHMPDESVSTENHRDRLLRMVKNLNPKVVTLVEQESNTNTA 170 **************.8999****************************************************************** PP GRAS 252 sFlerflealeyysalfdsleaklpreseerikv 285 F+ rfle+l+yy+a+f+s++++lpr ++eri+v Niben101Ctg04686g00002.1 171 AFFPRFLETLDYYTAMFESIDMTLPRGHKERINV 204 *******************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 47.973 | 1 | 204 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-79 | 2 | 204 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MLYEICPYFK FGYMSANGAI AEAMKDENRV HIIDFQIAQG SQWVTLIQAF AARPGGPPHI 60 RVTGIDDSTS AYARGGGLNI VGQRLSKLAK AFKVPFEFHA AAISGSDVQV ENLGIQPGEA 120 LAVNFAFTLH HMPDESVSTE NHRDRLLRMV KNLNPKVVTL VEQESNTNTA AFFPRFLETL 180 DYYTAMFESI DMTLPRGHKE RINV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 9e-42 | 2 | 204 | 83 | 283 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009605526.1 | 1e-150 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_009605527.1 | 1e-150 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_009605528.1 | 1e-150 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_018627583.1 | 1e-150 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_018627584.1 | 1e-150 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 1e-123 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A1S4APW1 | 1e-148 | A0A1S4APW1_TOBAC; scarecrow-like transcription factor PAT1 | ||||
STRING | XP_009605526.1 | 1e-149 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 1e-126 | GRAS family protein |
Publications ? help Back to Top | |||
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