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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Ctg01201g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 134aa MW: 14750.1 Da PI: 9.0241 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 85.1 | 9.8e-27 | 1 | 98 | 6 | 98 |
DUF260 6 kvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a p+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql Niben101Ctg01201g00001.1 1 RVLRKGCSESCSIRPCLqwiktPESQSNATVFLAKFYGRAGLMNLINAGPDPLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWQL 87 689************************************************************************************ PP DUF260 88 eqlkaelallk 98 +q ++e +l + Niben101Ctg01201g00001.1 88 CQNAVEDVLKG 98 **999877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 1.1E-20 | 1 | 93 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS50891 | 14.216 | 1 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
RVLRKGCSES CSIRPCLQWI KTPESQSNAT VFLAKFYGRA GLMNLINAGP DPLRPAIFRS 60 LLYEACGRIV NPIYGSVGLL WSGNWQLCQN AVEDVLKGAP ITPITSEVAV NNNGPPLKLP 120 YDIRHINKDD NAIK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009801662.1 | 4e-93 | PREDICTED: LOB domain-containing protein 41-like | ||||
Refseq | XP_016495337.1 | 4e-93 | PREDICTED: LOB domain-containing protein 41-like | ||||
Swissprot | Q9M886 | 2e-75 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A1S4C2G1 | 9e-92 | A0A1S4C2G1_TOBAC; LOB domain-containing protein 41-like | ||||
TrEMBL | A0A1U7YC06 | 9e-92 | A0A1U7YC06_NICSY; LOB domain-containing protein 41-like | ||||
STRING | XP_009801662.1 | 1e-92 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA886 | 24 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 8e-78 | LOB domain-containing protein 41 |