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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Neem_9865_f_3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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| Family |
GATA |
| Protein Properties |
Length: 355aa MW: 38950.2 Da PI: 6.3463 |
| Description |
GATA family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 55.1 | 1e-17 | 254 | 288 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C +C t kTp+WR gp g+ktLCnaCG++y++ +l
Neem_9865_f_3 254 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 288
99*****************************9885 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0007623 | Biological Process | circadian rhythm |
| GO:0009416 | Biological Process | response to light stimulus |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 355 aa
Download sequence Send
to blast |
MEAPEFFQGN YCSLFSAEKH HPFDSKTNGG DHFIVEELLD FSNEDAVVTD GGAFDNVTGN 60
STDSSTVTVV DSCNSSSFSG CEPNFAGDVG CRNFSDGHFS SDLCVPYDDL AELEWLSNFV 120
EESFSCEDLQ KLQLISGMKA RSDESSETRQ FQPELNRNND SSHININTNP NNPIFHPEMA 180
VPAKARSKRS RAAPCNWASR LLVLSPTSSS SEPEVIATAP PPPPPPSSGK KTVKAAGSKK 240
KEGGDEGNGE GRKCLHCATD KTPQWRTGPM GPKTLCNACG VRYKSGRLVP EYRPAASPTF 300
VLTKHSNSHR KVLELRRQKE MLRAQQQQQP HTLAPISGSL YDLVDARVGK FWWSF
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}. |
