PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Neem_9750_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Nin-like

Protein Properties

Length: 230aa MW: 25814.3 Da PI: 6.1301

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_9750_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83	2.9e-26	171	221	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k++s ++s+yF+++i++AAk+L+v+lTvLK++CR++GI+RWPhRk++sl Neem_9750_f_2 171 SKTLSKGTISQYFYMTITEAAKQLNVGLTVLKKRCRELGIQRWPHRKLTSL 221 6899999*****************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.665	153	230	IPR003035	RWP-RK domain
Pfam	PF02042	4.5E-22	174	221	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MATHSPNSWS TDELFVKEEA NLFSSLIQLP SEEFSGNGFT SLDWQNGLFL PDSCFDATPL 60 MESYADDPYA SLGIVPSPGF IEGEREIHTV FLVSFLFGLL LKRVLCYFPN KGDISDNYVN 120 GAGLLNELNP VFESEKQAIV LCSTNGETSE QSREEKKVRA CRKDKNTNSS SKTLSKGTIS 180 QYFYMTITEA AKQLNVGLTV LKKRCRELGI QRWPHRKLTS LQTLIKNLHV

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	1e-22	RWP-RK domain-containing protein