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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_9646_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 257aa MW: 28489.3 Da PI: 4.644 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.3 | 1.7e-08 | 10 | 34 | 22 | 48 |
T-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48 + W++Ia++++ Rt++++k++w+++l Neem_9646_f_1 10 R-WAAIASYLP-QRTDNDIKNYWNTHL 34 4.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.669 | 1 | 38 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.52E-8 | 9 | 40 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.2E-13 | 9 | 47 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.5E-7 | 10 | 34 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.15E-5 | 10 | 33 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MEYLMILMYR WAAIASYLPQ RTDNDIKNYW NTHLKKKLKK LQAGSEDHSR DGLSTNSQQI 60 SRGQWERRLQ TDIHMARQAL YEALSPEKPS FLSEFKPSNG FTSSAKSAAE ASTYASSTEN 120 IAKLLKGWAR NSPKSAACTN SAATQNSVNN NIAAAGAEST SSEGTPSKAE AADNNNGTEL 180 SETFESFFGL ESLDSSNSDL SQSVTPESSF LQDERKQEIP SAQMPQLSLL EKWLFEDQGG 240 KDYLITDLKL DEDTDIF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006431144.1 | 1e-103 | myb-related protein 306 | ||||
TrEMBL | V4UX79 | 1e-101 | V4UX79_9ROSI; Uncharacterized protein | ||||
STRING | XP_006431144.1 | 1e-102 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28910.1 | 3e-41 | myb domain protein 30 |