PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9606_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 395aa    MW: 43348.4 Da    PI: 8.0547
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9606_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14e-13149193347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ Iar     Rt+ q+ s+ qky
    Neem_9606_f_3 149 PWTEEEHRLFLIGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKY 193
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.2E-9146196IPR001005SANT/Myb domain
PROSITE profilePS5129416.838146198IPR017930Myb domain
SuperFamilySSF466891.2E-15147199IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-18147197IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.5E-11148192IPR009057Homeodomain-like
CDDcd001674.71E-9149194No hitNo description
PfamPF002491.0E-10149193IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT RASGGSPGVG SLKLFGVRLT DGSRIKKSAS MGNLSALHYH  60
SSSSAAASPN PDSPLSDHVR DPTHLTDGYL SDDPAHGSGS SNRRGERKKG VEKQTCPSHL  120
SLFSKRMSSH LIAHYPGPPG YEGWYSGVPW TEEEHRLFLI GLQKLGKGDW RGIARNYVVS  180
RTPTQVASHA QKYFIRQSNA SRRKRRSSLF DMVADDMATD TPPVPEEQVL LPSPLARESD  240
STNSLPSLNL SLNTEFEPME TVSKEPVKEP EETMTDSNEF TPAVSSFYPA YIPVPYPYWP  300
LNAAATEEEE KDSRTFHNHQ ILKPIPILPK EPVNVDELVG MSQLSIGESE RGLREPSPLS  360
LKLLGEPSRQ SAFHANAPVS GSDLRKGKTS PIQAL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426881.10.0transcription factor MYBS3
TrEMBLV4SSM00.0V4SSM0_9ROSI; Uncharacterized protein
STRINGXP_006426881.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93132735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.13e-96MYB_related family protein