PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9477_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 299aa    MW: 34838.8 Da    PI: 9.3707
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9477_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.4e-13106153355
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    r h  +E++RR+++N+ f  L  ++P       kK++Ka++Le +++Y+k+Lq
  Neem_9477_f_4 106 REHVLAEKKRREKLNQQFVALSAIVPGI-----KKMNKASVLEGTIKYLKELQ 153
                    56999*********************97.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.478103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-10106153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-16107165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-15107168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.58E-11108157No hitNo description
SMARTSM003532.7E-14109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDQNPTFIHQ KNSQSFDTIN GDFNFEPLRL SCTNSNVSQL ISFQDVNRNL KDCTMIKPKD  60
EEELLWYENI DSNSFSIVNN NKATKTLKEY RQQGIRTTIR SPLQAREHVL AEKKRREKLN  120
QQFVALSAIV PGIKKMNKAS VLEGTIKYLK ELQEKERKLV EQTEKKSLQK YSVVSVKKSQ  180
LLDTDKFDAS SSPENSDGYR YNEQSLPDIL VRVSDNNILI RIHCLNQNGY IVRILREIEK  240
LHLRVINSRI IPFGKYSLDA TVVAQHDVDF YLQVIKHTRV LKYTWEACMN DINGTWKYC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112117KKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015385626.22e-75transcription factor bHLH25-like
TrEMBLA0A2H5QQB32e-75A0A2H5QQB3_CITUN; Uncharacterized protein
STRINGXP_006478068.15e-75(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2296534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.19e-45bHLH family protein