PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_9433_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 353aa MW: 38674.8 Da PI: 9.4558 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.9 | 2.7e-13 | 11 | 53 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i ++s r+ ++ kRr g+lKK +EL +LC++++ +ii+s+++k Neem_9433_f_1 11 IVSDSARKASLKKRRVGLLKKVSELTTLCGVNAFIIIYSPEDK 53 568899*********************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.264 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-18 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-21 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 6.58E-28 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 6.2E-6 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-13 | 11 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-6 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-6 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MTRKKVKLVW IVSDSARKAS LKKRRVGLLK KVSELTTLCG VNAFIIIYSP EDKEPAMWPS 60 RPVVQQLLAR FHSLPEMERC KKMMNQETYL KERVTKVQEQ LKKHHRKNKE TDVSIIMRQI 120 YHDKTLDDCN VSELRGLIWF VEEKKKDIRK RIEYYQQVNP LPPETSLPPP NQLPAPVDAT 180 AQVGGSTSGD VRTATEPAHW DQWFIDMMNN SVNTAGSSSS RAKNDVGLTP HQAFAASCSA 240 ANQMGFPHGT LGAYNISGSD MGLPHGNIHI SSSSHGGGSD IGVGLPDINV GGNNNNRGNE 300 INLGLPQGNA AAGSTVASSN MGPSSEFFGG SIAGSDVGLP YHVTKPWPNN FYP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLVWIVSDSARKASLKKRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006481616.1 | 1e-141 | agamous-like MADS-box protein AGL8 homolog | ||||
TrEMBL | V4SW84 | 1e-127 | V4SW84_9ROSI; Uncharacterized protein | ||||
STRING | XP_006481616.1 | 1e-140 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 6e-30 | AGAMOUS-like 80 |