PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9289_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Trihelix
Protein Properties Length: 610aa    MW: 69566.4 Da    PI: 9.7035
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9289_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.82.7e-13418501186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W++  + +Liea  ++  rl+rg l++++W+ev++ +  re g   +++ +qCk++++ l+k+yk +k+          s++p++ +l+
  Neem_9289_f_2 418 CWSEGATETLIEAWGDRYVRLNRGHLRQKDWKEVAESVnsRENGAksKKTDIQCKNRIDTLKKKYKVEKAKPPP------SKWPFYYRLD 501
                    7*************************************99555554388******************9998886......5799999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513755.6123469IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.925102136IPR002885Pentatricopeptide repeat
PfamPF015350.34105129IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.427137171IPR002885Pentatricopeptide repeat
PfamPF130413.8E-8137184IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.3E-5140173IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.073172206IPR002885Pentatricopeptide repeat
PfamPF128541.1E-7203235IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.512207241IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.3E-4210238IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.835277311IPR002885Pentatricopeptide repeat
PfamPF138371.3E-25416503No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MSLLRKLPNR SFVHQSIVTA RFFTTANAFP DEPTSVYYDD LVNAAGSERD LETVRYLLNK  60
RMRDSCFNTA NTFKFITNTE ISLSILNDLY KTLARLDKGF TRKSAYDTLI ARLCKMRKID  120
EALRAVDIMA EGEFGLNACT FHPILSALTR GKKMEDAWRL INLMKQVKVS PDITAYNYLL  180
TAYCFSRNLT AASEVLKRME EEGLGADART YDALVLGACK AGKVEEAFVL LRRMVDDGQS  240
GLYSTFAHVN SVLLKMGYYA QAVKFVMVCG GKDIKLDTEL FGSLASKLIG LGRFDDAKFI  300
LKEMNSRGLK MGHKLRDYYE INPSKGNKII QLLKFIPSNP VTVDDVTGDH NARPSLLLPL  360
SLPTTFFLHS FFDFLCLRPI YQRRTLAHPQ QEKMEPRASH HVRSTHAPTG SGGGREDCWS  420
EGATETLIEA WGDRYVRLNR GHLRQKDWKE VAESVNSREN GAKSKKTDIQ CKNRIDTLKK  480
KYKVEKAKPP PSKWPFYYRL DSLIGTDAVN KKPTTVTLRV KSKPNTSFIG RELARAILKF  540
GEIYERIESE KQKQMMELEK ERMEFIKDVE CERLNMFMLA QLEIQKLKRK NRPAGSEVLE  600
AAECIMLSEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A9e-263331914442pentatricopeptide repeat protein dPPR-U10
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015388203.10.0pentatricopeptide repeat-containing protein At3g56030, mitochondrial-like
RefseqXP_024042222.10.0pentatricopeptide repeat-containing protein At3g56030, mitochondrial-like
SwissprotQ9LY431e-107PP283_ARATH; Pentatricopeptide repeat-containing protein At3g56030, mitochondrial
TrEMBLA0A2H5NJV80.0A0A2H5NJV8_CITUN; Uncharacterized protein
STRINGXP_006435776.11e-162(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM780022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.21e-42sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]
  2. Carrie C,Venne AS,Zahedi RP,Soll J
    Identification of cleavage sites and substrate proteins for two mitochondrial intermediate peptidases in Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(9): p. 2691-708
    [PMID:25732537]