PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Neem_9289_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

LBD

Protein Properties

Length: 177aa MW: 20147 Da PI: 8.3545

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_9289_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.2	4.5e-41	19	118	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+l+rkC ++C++apyf +++pkkfa vhk+FGasnv+k+l+++pee+red+++sl+yeAear+rdPvyG++g i lq+++ +l+++la+ Neem_9289_f_1 19 SCAACKFLKRKCIPNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMFELQHDLAV 114 6*********************************************************************************************99 PP DUF260 97 lkee 100 ++++ Neem_9289_f_1 115 ARAR 118 9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.888	18	119	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-40	19	116	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MKWMYNEVMR SHEPRSSSSC AACKFLKRKC IPNCIFAPYF RSDEPKKFAK VHKVFGASNV 60 SKILTEVPEE QREDTVNSLA YEAEARLRDP VYGCIGAIAL LQRKMFELQH DLAVARARLA 120 RYTAANTCTV QNDYRVAMLP AFNDFVAGGG FENFGQNSSE FNRVGDMYDF SQVPYIQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-50	14	122	6	114	LOB family transfactor Ramosa2.1
5ly0_B	7e-50	14	122	6	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435777.1	1e-101	LOB domain-containing protein 21
Refseq	XP_006486289.1	1e-101	LOB domain-containing protein 21
Swissprot	Q9SRL8	2e-67	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A067FNC5	1e-100	A0A067FNC5_CITSI; Uncharacterized protein
TrEMBL	A0A2H5NJW6	1e-100	A0A2H5NJW6_CITUN; Uncharacterized protein
TrEMBL	V4T709	1e-100	V4T709_9ROSI; Uncharacterized protein
STRING	XP_006486289.1	1e-101	(Citrus sinensis)
STRING	XP_006435777.1	1e-101	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10255	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	8e-70	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]