PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9167_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 156aa    MW: 17207.5 Da    PI: 4.6008
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9167_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.51.3e-121156346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT+e d+ + +a + ++ +   +W++Ia+ ++ g++l+++k+++  
    Neem_9167_f_4 11 VWTKEQDKAFENALATYPEDasdRWEKIAADVP-GKSLEEIKHHYEV 56
                     7********************************.**********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.622762IPR017884SANT domain
SMARTSM007174.4E-10860IPR001005SANT/Myb domain
SuperFamilySSF466892.08E-121066IPR009057Homeodomain-like
PfamPF002493.6E-101155IPR001005SANT/Myb domain
CDDcd001672.24E-101258No hitNo description
Gene3DG3DSA:1.10.10.606.2E-61257IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MTVDEVGSSS VWTKEQDKAF ENALATYPED ASDRWEKIAA DVPGKSLEEI KHHYEVLVDD  60
VNRIESGSVP LPSYNSSFDG STSHAGDEGT SKKGGHYGHY NSESNHGNKS SRSDQERRKG  120
IAWTEDEHSF LIQRVAAIKS LADAEEAISQ QPIVDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-20777676RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437648.15e-79transcription factor SRM1
RefseqXP_006437649.15e-79transcription factor SRM1
RefseqXP_006484484.15e-79transcription factor SRM1
RefseqXP_015387550.15e-79transcription factor SRM1
RefseqXP_015387551.15e-79transcription factor SRM1
RefseqXP_024041573.15e-79transcription factor SRM1
RefseqXP_024041574.15e-79transcription factor SRM1
RefseqXP_024041575.15e-79transcription factor SRM1
RefseqXP_024041576.15e-79transcription factor SRM1
RefseqXP_024956475.15e-79transcription factor SRM1
SwissprotQ9FNN63e-48SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A067G2J51e-77A0A067G2J5_CITSI; Uncharacterized protein
TrEMBLA0A2H5P3L91e-77A0A2H5P3L9_CITUN; Uncharacterized protein
TrEMBLA0A2H5P3M42e-77A0A2H5P3M4_CITUN; Uncharacterized protein (Fragment)
TrEMBLV4VEK01e-77V4VEK0_9ROSI; Uncharacterized protein
STRINGXP_006484484.12e-78(Citrus sinensis)
STRINGXP_006437648.12e-78(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2312134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-50MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]