PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_9148_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C2H2 | ||||||||
Protein Properties | Length: 249aa MW: 27703.4 Da PI: 6.2434 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 88 | 110 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H Neem_9148_f_2 88 FECQYCFKEFANSQALGGHQNAH 110 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.11E-6 | 84 | 115 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.2E-6 | 84 | 114 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.406 | 88 | 115 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MEMEASYNVL SHTSDDGENA NSAGSCVEKK LRLFGFELNP SNNNDSSLKG SAEADESVNS 60 SNTASSASEK PSKDKSNSSI GEADEKKFEC QYCFKEFANS QALGGHQNAH KKERMKKKRL 120 QLQARKASLS CYLQPLQNNL SFNYHGSSAW FYDPSCYTPE QFTLYEESQI SFNPYDQDVH 180 LNGSQVSRWY STLPTQTTFQ QDSSMFTLTH TDRSGENRPV IIKPSPLSAP KQSCKSLDLQ 240 LGLSLQSGV |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM447239 | 1e-32 | AM447239.1 Vitis vinifera contig VV78X242690.5, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007044496.1 | 1e-120 | PREDICTED: zinc finger protein 5 | ||||
TrEMBL | A0A061E6R5 | 1e-119 | A0A061E6R5_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative | ||||
STRING | EOY00328 | 1e-119 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7325 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10480.1 | 5e-20 | zinc finger protein 5 |